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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039312 through 18771 annotations produced 1 hits



(CG10514):

Annotation Number : CG10514
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039312
Gbrowse : chr3R:21104148-21105530 (-) // 100.0 //
Probeset : 1638424_at
Accessions : protein= NP_651371;, nucleotide= NM_143114;
FlyMine data for FBgn0039312.
BioGrid reports that CG10514 interacts with CG11892 .
VDRC has 2 RNAi stocks for FBgn0039312 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain244 44 of 4 0.60None
Head90 134 of 4 0.20Down
Eye15 24 of 4 0.04Down
Thoracicoabdominal ganglion643 274 of 4 1.50None
Salivary gland6 20 of 4 0.02Down
Crop6 12 of 4 0.00Down
Midgut14 23 of 4 0.00Down
Tubule6203 1544 of 414.20Up
Hindgut46 74 of 4 0.10Down
Heart10 23 of 4 0.02Down
Fat body38 592 of 4 0.09Down
Ovary6 02 of 4 0.00Down
Testis17 04 of 4 0.00Down
Male accessory glands8 10 of 4 0.00Down
Virgin spermatheca238 314 of 4 0.54None
Mated spermatheca178 244 of 4 0.41None
Adult carcass48 84 of 4 0.10Down
Larval CNS5 13 of 4 0.01Down
Larval Salivary gland4 10 of 4 0.01Down
Larval midgut6 10 of 4 0.02Down
Larval tubule5224 1074 of 411.90Up
Larval hindgut62 74 of 4 0.14Down
Larval fat body16 91 of 4 0.00Down
Larval trachea5 30 of 4 0.01Down
Larval carcass9 02 of 4 0.02Down
S2 cells (growing)5 03 of 4 0.01Down
Whole fly438 884 of 4

Looking for FBgn0039312. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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