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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039313 through 18771 annotations produced 1 hits


Annotation Number : CG11892
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039313
Gbrowse : chr3R:21107269-21108964 (+) // 100.0 //
Probeset : 1624892_s_at
Accessions : protein= NP_651372; /// NP_733089;, nucleotide= NM_143115; /// NM_170210;
FlyMine data for FBgn0039313.
BDGP gene expression has embryonic in situ data for CG11892: 4 pix of staining in 1 body parts.
BioGrid reports that CG11892 interacts with CG14472 CG3325 CG9986 .
VDRC has 2 RNAi stocks for FBgn0039313 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 24 of 4 0.20Down
Head32 34 of 4 0.10Down
Eye7 11 of 4 0.01Down
Thoracicoabdominal ganglion1122 354 of 4 2.20Up
Salivary gland7 20 of 4 0.02Down
Crop4 10 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule7339 1804 of 414.50Up
Hindgut13 42 of 4 0.00Down
Heart11 33 of 4 0.02Down
Fat body37 492 of 4 0.07Down
Ovary21 24 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca776 334 of 4 1.53None
Mated spermatheca697 624 of 4 1.38None
Adult carcass35 93 of 4 0.10Down
Larval CNS2 11 of 4 0.01Down
Larval Salivary gland8 11 of 4 0.02Down
Larval midgut5 10 of 4 0.01Down
Larval tubule6785 1544 of 413.40Up
Larval hindgut68 114 of 4 0.13Down
Larval fat body22 171 of 4 0.00Down
Larval trachea3 10 of 4 0.01Down
Larval carcass7 11 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly506 1014 of 4

Looking for FBgn0039313. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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