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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039319 through 18771 annotations produced 1 hits



(CG13659):

Annotation Number : CG13659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039319
Gbrowse : chr3R:21126632-21128012 (+) // 100.0 //
Probeset : 1633857_at
Accessions : protein= NP_651378;, nucleotide= NM_143121;
FlyMine data for FBgn0039319.
BioGrid reports that CG13659 interacts with CG14213 .
VDRC has 1 RNAi stocks for FBgn0039319 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 34 of 4 2.20Up
Head46 ± 34 of 4 1.20None
Eye14 ± 14 of 4 0.37Down
Thoracicoabdominal ganglion48 ± 04 of 4 1.20None
Salivary gland23 ± 42 of 4 0.60None
Crop8 ± 12 of 4 0.20Down
Midgut397 ± 164 of 410.00Up
Tubule464 ± 1344 of 411.70Up
Hindgut60 ± 54 of 4 1.50None
Heart10 ± 13 of 4 0.27Down
Fat body21 ± 24 of 4 0.53None
Ovary5 ± 00 of 4 0.10Down
Testis6 ± 02 of 4 0.20Down
Male accessory glands10 ± 41 of 4 0.30Down
Virgin spermatheca78 ± 54 of 4 1.96Up
Mated spermatheca78 ± 44 of 4 1.96Up
Adult carcass23 ± 43 of 4 0.60None
Larval CNS11 ± 24 of 4 0.29Down
Larval Salivary gland32 ± 24 of 4 0.81None
Larval midgut110 ± 104 of 4 2.78Up
Larval tubule71 ± 24 of 4 1.80Up
Larval hindgut52 ± 14 of 4 1.32None
Larval fat body31 ± 134 of 4 0.80None
Larval trachea30 ± 44 of 4 0.76None
Larval carcass73 ± 154 of 4 1.84None
S2 cells (growing)9 ± 03 of 4 0.24Down
Whole fly39 ± 64 of 4

Looking for FBgn0039319. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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