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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039323 through 18771 annotations produced 1 hits


Annotation Number : CG10559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039323
Gbrowse : chr3R:21140390-21141826 (-) // 100.0 //
Probeset : 1638388_at
Accessions : protein= NP_651382;, nucleotide= NM_143125;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039323.
BioGrid reports that CG10559 interacts with CG1690 CG17510 CG18624 CG2813 CG14578 CG6070 CG13427 CG2985 CG3979 CG8280 CG8942 CG31094 .
VDRC has 2 RNAi stocks for FBgn0039323 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head13 23 of 4 1.00None
Eye8 10 of 4 0.66Down
Thoracicoabdominal ganglion2 00 of 4 0.20Down
Salivary gland160 74 of 412.05Up
Crop55 24 of 4 4.10Up
Midgut229 254 of 417.20Up
Tubule9 00 of 4 0.70Down
Hindgut53 34 of 4 4.00Up
Heart2 10 of 4 0.19Down
Fat body4 20 of 4 0.34Down
Ovary3 10 of 4 0.30Down
Testis10 13 of 4 0.80None
Male accessory glands13 20 of 4 1.00None
Virgin spermatheca12 12 of 4 0.96None
Mated spermatheca16 13 of 4 1.23None
Adult carcass17 31 of 4 1.30None
Larval CNS2 10 of 4 0.19Down
Larval Salivary gland195 154 of 414.68Up
Larval midgut35 13 of 4 2.65Up
Larval tubule18 13 of 4 1.40Up
Larval hindgut69 14 of 4 5.20Up
Larval fat body3 10 of 4 0.20Down
Larval trachea98 74 of 4 7.37Up
Larval carcass18 31 of 4 1.42None
S2 cells (growing)3 00 of 4 0.28Down
Whole fly13 03 of 4

Looking for FBgn0039323. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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