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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039329 through 18771 annotations produced 1 hits



(CG10669):

Annotation Number : CG10669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039329
Gbrowse : chr3R:21157383-21161006 (-) // 100.0 //
Probeset : 1633037_at
Accessions : protein= NP_001163728; /// NP_651388;, nucleotide= NM_001170257; /// NM_143131;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0039329.
BDGP gene expression has embryonic in situ data for CG10669: 11 pix of staining in 7 body parts.
Homophila reports that CG10669 is a close match (3e-11) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
TRiP has 1 RNAi stocks for FBgn0039329 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039329 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 34 of 4 2.40Up
Head20 14 of 4 1.10None
Eye20 04 of 4 1.11None
Thoracicoabdominal ganglion38 24 of 4 2.10Up
Salivary gland30 42 of 4 1.69Up
Crop18 21 of 4 1.00None
Midgut19 10 of 4 1.10None
Tubule17 03 of 4 1.00None
Hindgut19 03 of 4 1.10None
Heart10 22 of 4 0.60None
Fat body16 81 of 4 0.91None
Ovary32 14 of 4 1.80Up
Testis9 22 of 4 0.50Down
Male accessory glands8 30 of 4 0.50None
Virgin spermatheca10 13 of 4 0.56Down
Mated spermatheca9 13 of 4 0.52Down
Adult carcass19 32 of 4 1.10None
Larval CNS37 14 of 4 2.05Up
Larval Salivary gland14 00 of 4 0.82None
Larval midgut12 10 of 4 0.68None
Larval tubule19 14 of 4 1.10None
Larval hindgut14 22 of 4 0.79None
Larval fat body15 10 of 4 0.80None
Larval trachea10 42 of 4 0.60None
Larval carcass16 00 of 4 0.89None
S2 cells (growing)38 24 of 4 2.10Up
Whole fly18 24 of 4

Looking for FBgn0039329. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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