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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039336 through 18771 annotations produced 1 hits



(CG4553):

Annotation Number : CG4553
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039336
Gbrowse : chr3R:21301483-21302637 (-) // 100.0 //
Probeset : 1628291_at
Accessions : protein= NP_651396;, nucleotide= NM_143139;
FlyMine data for FBgn0039336.
BioGrid reports that CG4553 interacts with CG9426 .
VDRC has 2 RNAi stocks for FBgn0039336 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 ± 24 of 4 0.80Down
Head40 ± 54 of 4 0.60Down
Eye29 ± 14 of 4 0.46Down
Thoracicoabdominal ganglion52 ± 44 of 4 0.80None
Salivary gland46 ± 84 of 4 0.74None
Crop48 ± 24 of 4 0.80Down
Midgut28 ± 34 of 4 0.50Down
Tubule29 ± 04 of 4 0.50Down
Hindgut46 ± 44 of 4 0.70Down
Heart35 ± 44 of 4 0.56Down
Fat body31 ± 34 of 4 0.50Down
Ovary90 ± 44 of 4 1.40Up
Testis13 ± 14 of 4 0.20Down
Male accessory glands45 ± 44 of 4 0.70Down
Virgin spermatheca31 ± 24 of 4 0.49Down
Mated spermatheca34 ± 34 of 4 0.55Down
Adult carcass48 ± 34 of 4 0.80Down
Larval CNS59 ± 24 of 4 0.94None
Larval Salivary gland51 ± 24 of 4 0.81Down
Larval midgut26 ± 14 of 4 0.41Down
Larval tubule24 ± 34 of 4 0.40Down
Larval hindgut51 ± 34 of 4 0.81Down
Larval fat body29 ± 34 of 4 0.50Down
Larval trachea52 ± 144 of 4 0.84None
Larval carcass45 ± 44 of 4 0.72Down
S2 cells (growing)44 ± 14 of 4 0.70Down
Whole fly63 ± 24 of 4

Looking for FBgn0039336. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime