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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039338 through 18771 annotations produced 1 hits



XNP (XNP):

Annotation Number : CG4548
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039338
Gbrowse : chr3R:21303583-21308549 (-) // 100.0 //
Probeset : 1630882_s_at
Accessions : protein= NP_651398; /// NP_733107;, nucleotide= NM_143141; /// NM_170228;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 /
FlyMine data for FBgn0039338.
BDGP gene expression has embryonic in situ data for XNP: 17 pix of staining in 10 body parts.
Homophila reports that CG4548 is a close match (8e-18) to human gene CHD7;IS3;KAL5 (NP_060250), a gene associated with CHARGE syndrome, 214800 (3);Kallmann syndrome 5, 612370 (3);{Scoliosis, idiopathic 3}, 608765 (3).
TRiP has 2 RNAi stocks for FBgn0039338 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039338 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain521 184 of 4 2.30Up
Head200 154 of 4 0.90None
Eye150 54 of 4 0.65Down
Thoracicoabdominal ganglion432 174 of 4 1.90Up
Salivary gland198 54 of 4 0.86None
Crop240 104 of 4 1.00None
Midgut117 44 of 4 0.50Down
Tubule144 44 of 4 0.60Down
Hindgut188 94 of 4 0.80Down
Heart113 54 of 4 0.49Down
Fat body154 384 of 4 0.67Down
Ovary459 34 of 4 2.00Up
Testis177 44 of 4 0.80Down
Male accessory glands218 84 of 4 0.90None
Virgin spermatheca204 84 of 4 0.89None
Mated spermatheca198 124 of 4 0.86None
Adult carcass151 84 of 4 0.70Down
Larval CNS782 194 of 4 3.39Up
Larval Salivary gland275 94 of 4 1.19Up
Larval midgut127 114 of 4 0.55Down
Larval tubule186 64 of 4 0.80Down
Larval hindgut196 54 of 4 0.85None
Larval fat body138 44 of 4 0.60Down
Larval trachea264 84 of 4 1.15None
Larval carcass250 94 of 4 1.09None
S2 cells (growing)408 134 of 4 1.77Up
Whole fly230 114 of 4

Looking for FBgn0039338. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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