FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039338 through 18771 annotations produced 1 hits

XNP (XNP):

Annotation Number : CG4548
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039338
Gbrowse : chr3R:21303583-21308549 (-) // 100.0 //
Probeset : 1630882_s_at
Accessions : protein= NP_651398; /// NP_733107;, nucleotide= NM_143141; /// NM_170228;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 /
FlyMine data for FBgn0039338.
BDGP gene expression has embryonic in situ data for XNP: 17 pix of staining in 10 body parts.
Homophila reports that CG4548 is a close match (8e-18) to human gene CHD7;IS3;KAL5 (NP_060250), a gene associated with CHARGE syndrome, 214800 (3);Kallmann syndrome 5, 612370 (3);{Scoliosis, idiopathic 3}, 608765 (3).
TRiP has 2 RNAi stocks for FBgn0039338 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039338 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	521 ± 18	4 of 4	2.30	Up
Head	200 ± 15	4 of 4	0.90	None
Eye	150 ± 5	4 of 4	0.65	Down
Thoracicoabdominal ganglion	432 ± 17	4 of 4	1.90	Up
Salivary gland	198 ± 5	4 of 4	0.86	None
Crop	240 ± 10	4 of 4	1.00	None
Midgut	117 ± 4	4 of 4	0.50	Down
Tubule	144 ± 4	4 of 4	0.60	Down
Hindgut	188 ± 9	4 of 4	0.80	Down
Heart	113 ± 5	4 of 4	0.49	Down
Fat body	154 ± 38	4 of 4	0.67	Down
Ovary	459 ± 3	4 of 4	2.00	Up
Testis	177 ± 4	4 of 4	0.80	Down
Male accessory glands	218 ± 8	4 of 4	0.90	None
Virgin spermatheca	204 ± 8	4 of 4	0.89	None
Mated spermatheca	198 ± 12	4 of 4	0.86	None
Adult carcass	151 ± 8	4 of 4	0.70	Down
Larval CNS	782 ± 19	4 of 4	3.39	Up
Larval Salivary gland	275 ± 9	4 of 4	1.19	Up
Larval midgut	127 ± 11	4 of 4	0.55	Down
Larval tubule	186 ± 6	4 of 4	0.80	Down
Larval hindgut	196 ± 5	4 of 4	0.85	None
Larval fat body	138 ± 4	4 of 4	0.60	Down
Larval trachea	264 ± 8	4 of 4	1.15	None
Larval carcass	250 ± 9	4 of 4	1.09	None
S2 cells (growing)	408 ± 13	4 of 4	1.77	Up
Whole fly	230 ± 11	4 of 4

Looking for FBgn0039338. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720