FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039343 through 18771 annotations produced 1 hits

(CG5111):

Annotation Number : CG5111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039343
Gbrowse : chr3R:21331996-21334001 (+) // 100.0 //
Probeset : 1629489_at
Accessions : protein= NP_651402;, nucleotide= NM_143145;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039343.
BDGP gene expression has embryonic in situ data for CG5111: 4 pix of staining in 1 body parts.
BioGrid reports that CG5111 interacts with CG7787 CG9975 CG5271 CG5376 CG5450 CG5537 CG7041 CG7172 CG7386 CG7818 .
VDRC has 3 RNAi stocks for FBgn0039343 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.00	Down
Head	1 ± 0	0 of 4	0.00	Down
Eye	0 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.10	Down
Salivary gland	1 ± 0	0 of 4	0.09	Down
Crop	2 ± 1	0 of 4	0.10	Down
Midgut	3 ± 0	0 of 4	0.20	Down
Tubule	0 ± 0	0 of 4	0.00	Down
Hindgut	0 ± 0	0 of 4	0.00	Down
Heart	0 ± 0	0 of 4	0.01	Down
Fat body	6 ± 6	2 of 4	0.31	Down
Ovary	3 ± 0	0 of 4	0.20	Down
Testis	346 ± 10	4 of 4	16.60	Up
Male accessory glands	24 ± 2	4 of 4	1.20	None
Virgin spermatheca	6 ± 1	0 of 4	0.31	Down
Mated spermatheca	8 ± 3	2 of 4	0.41	Down
Adult carcass	3 ± 2	0 of 4	0.20	Down
Larval CNS	7 ± 4	3 of 4	0.34	Down
Larval Salivary gland	1 ± 0	0 of 4	0.05	Down
Larval midgut	0 ± 0	0 of 4	0.02	Down
Larval tubule	0 ± 0	0 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.05	Down
Larval fat body	39 ± 22	3 of 4	1.90	None
Larval trachea	2 ± 2	0 of 4	0.11	Down
Larval carcass	0 ± 0	0 of 4	0.04	Down
S2 cells (growing)	0 ± 0	0 of 4	0.02	Down
Whole fly	20 ± 2	4 of 4

Looking for FBgn0039343. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720