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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039354 through 18771 annotations produced 1 hits



Lgr3 (Lgr3):

Annotation Number : CG31096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039354
Gbrowse : chr3R:21491530-21502938 (+) // 100.0 //
Probeset : 1641176_at
Accessions : protein= NP_733115;, nucleotide= NM_170236;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0039354.
BDGP gene expression has embryonic in situ data for Lgr3: 4 pix of staining in 1 body parts.
Homophila reports that CG31096 is a close match (7e-11) to human gene LRRC8;KIAA1437 (NP_062540), a gene associated with Agammaglobulinemia, non-Bruton type, 601495 (3).
TRiP has 2 RNAi stocks for FBgn0039354 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 24 of 412.40Up
Head9 02 of 4 3.20Up
Eye2 10 of 4 0.97None
Thoracicoabdominal ganglion19 14 of 4 6.30Up
Salivary gland13 12 of 4 4.43Up
Crop2 10 of 4 0.80None
Midgut7 20 of 4 2.60None
Tubule6 00 of 4 2.00Up
Hindgut8 23 of 4 2.90None
Heart3 10 of 4 1.05None
Fat body4 40 of 4 1.53None
Ovary6 11 of 4 2.00None
Testis5 00 of 4 1.90None
Male accessory glands4 20 of 4 1.40None
Virgin spermatheca3 10 of 4 1.11None
Mated spermatheca3 10 of 4 1.07None
Adult carcass15 41 of 4 5.20None
Larval CNS36 04 of 411.96Up
Larval Salivary gland6 20 of 4 2.11None
Larval midgut10 30 of 4 3.38None
Larval tubule9 22 of 4 3.20Up
Larval hindgut6 01 of 4 2.21Up
Larval fat body8 13 of 4 2.90Up
Larval trachea4 21 of 4 1.50None
Larval carcass36 134 of 411.90None
S2 cells (growing)4 00 of 4 1.50None
Whole fly3 00 of 4

Looking for FBgn0039354. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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