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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039367 through 18771 annotations produced 1 hits



(CG17197):

Annotation Number : CG17197
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039367
Gbrowse : chr3R:21600052-21601003 (-) // 100.0 //
Probeset : 1635901_at
Accessions : protein= NP_651425;, nucleotide= NM_143168;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0039367.
VDRC has 3 RNAi stocks for FBgn0039367 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head4 ± 00 of 4 0.20Down
Eye3 ± 00 of 4 0.15Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland7 ± 30 of 4 0.33Down
Crop7 ± 10 of 4 0.30Down
Midgut2 ± 00 of 4 0.10Down
Tubule4 ± 10 of 4 0.20Down
Hindgut8 ± 20 of 4 0.40Down
Heart4 ± 10 of 4 0.20Down
Fat body13 ± 90 of 4 0.57None
Ovary2 ± 00 of 4 0.10Down
Testis176 ± 54 of 4 7.80Up
Male accessory glands6 ± 30 of 4 0.30Down
Virgin spermatheca5 ± 10 of 4 0.23Down
Mated spermatheca3 ± 10 of 4 0.17Down
Adult carcass13 ± 50 of 4 0.60None
Larval CNS3 ± 10 of 4 0.16Down
Larval Salivary gland3 ± 00 of 4 0.15Down
Larval midgut2 ± 00 of 4 0.10Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut9 ± 10 of 4 0.42Down
Larval fat body35 ± 161 of 4 1.50None
Larval trachea3 ± 30 of 4 0.14Down
Larval carcass4 ± 10 of 4 0.19Down
S2 cells (growing)5 ± 10 of 4 0.24Down
Whole fly22 ± 02 of 4

Looking for FBgn0039367. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime