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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039373 through 18771 annotations produced 1 hits


(CG5024):

Annotation Number : CG5024
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039373
Gbrowse : chr3R:21636817-21637478 (+) // 100.0 //
Probeset : 1626399_at
Accessions : protein= NP_001163736; /// NP_651431;, nucleotide= NM_001170265; /// NM_143174;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0039373.
BDGP gene expression has embryonic in situ data for CG5024: 4 pix of staining in 1 body parts.
BioGrid reports that CG5024 interacts with CG5050 .
VDRC has 3 RNAi stocks for FBgn0039373 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.00Down
Head6 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion6 ± 00 of 4 0.00Down
Salivary gland21 ± 31 of 4 0.10Down
Crop9 ± 21 of 4 0.00Down
Midgut7 ± 11 of 4 0.00Down
Tubule5 ± 10 of 4 0.00Down
Hindgut9 ± 10 of 4 0.00Down
Heart3 ± 00 of 4 0.01Down
Fat body12 ± 52 of 4 0.06Down
Ovary1 ± 00 of 4 0.00Down
Testis1814 ± 454 of 4 9.00Up
Male accessory glands11 ± 31 of 4 0.10Down
Virgin spermatheca13 ± 14 of 4 0.07Down
Mated spermatheca19 ± 43 of 4 0.09Down
Adult carcass9 ± 20 of 4 0.00Down
Larval CNS5 ± 21 of 4 0.03Down
Larval Salivary gland11 ± 22 of 4 0.06Down
Larval midgut6 ± 10 of 4 0.03Down
Larval tubule6 ± 10 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.02Down
Larval fat body144 ± 874 of 4 0.70None
Larval trachea7 ± 61 of 4 0.04Down
Larval carcass4 ± 10 of 4 0.02Down
S2 cells (growing)3 ± 10 of 4 0.02Down
Whole fly202 ± 274 of 4

Looking for FBgn0039373. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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