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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039374 through 18771 annotations produced 2 hits


Calmodulin-related 97A /// (And /// CG17770):

Annotation Number : CG17770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011273 /// FBgn0039374
Gbrowse : chr3R:21637710-21638205 (+) // 100.0 //
Probeset : 1639688_at
Accessions : protein= NP_001163737; /// NP_476988; /// NP_651432;, nucleotide= NM_001170266; /// NM_057640; /// NM_143175;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // c
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0011273 /// FBgn0039374.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 10 of 4 0.10Down
Eye3 ± 01 of 4 0.09Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland8 ± 30 of 4 0.24Down
Crop2 ± 00 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body4 ± 20 of 4 0.13Down
Ovary0 ± 00 of 4 0.00Down
Testis451 ± 254 of 412.90Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.06Down
Mated spermatheca2 ± 00 of 4 0.07Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.05Down
Larval Salivary gland0 ± 00 of 4 0.03Down
Larval midgut2 ± 10 of 4 0.08Down
Larval tubule2 ± 01 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body23 ± 123 of 4 0.70None
Larval trachea2 ± 10 of 4 0.06Down
Larval carcass1 ± 10 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly35 ± 14 of 4


Calmodulin-related 97A /// (And /// CG17770):

Annotation Number : CG17769
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011273 /// FBgn0039374
Gbrowse : chr3R:21638260-21638924 (+) // 100.0 //
Probeset : 1632147_at
Accessions : protein= NP_001163737; /// NP_476988; /// NP_651432;, nucleotide= NM_001170266; /// NM_057640; /// NM_143175;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // c
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0011273 /// FBgn0039374.
Homophila reports that CG17769 is a close match (5e-11) to human gene CMH10;MYL2 (NP_000423), a gene associated with Cardiomyopathy, familial hypertrophic, 10, 608758 (3);Cardiomyopathy, hypertrophic, mid-left ventricular chamber type, 608758 (3).
BioGrid reports that CG17769 interacts with CG2999 CG33135 CG5545 CG7178 CG18069 CG2109 CG2146 CG2225 CG2955 CG3796 CG4590 CG5987 CG7913 CG8679 CG9437 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye4 ± 11 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland10 ± 10 of 4 0.05Down
Crop3 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body8 ± 23 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis1964 ± 274 of 410.00Up
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 11 of 4 0.02Down
Mated spermatheca7 ± 12 of 4 0.04Down
Adult carcass6 ± 22 of 4 0.00Down
Larval CNS3 ± 12 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.02Down
Larval midgut4 ± 20 of 4 0.02Down
Larval tubule3 ± 11 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.02Down
Larval fat body204 ± 1184 of 4 1.00None
Larval trachea12 ± 172 of 4 0.06Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly196 ± 124 of 4

Looking for FBgn0039374. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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