Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039381 through 18771 annotations produced 1 hits



SPP-like protein 3 (CG17370):

Annotation Number : CG17370
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039381
Gbrowse : chr3R:21707706-21713286 (+) // 100.0 //
Probeset : 1629968_s_at
Accessions : protein= NP_001163740; /// NP_001163741; /// NP_651437; /// NP_733123; /// NP_733124;, nucleotide= NM_001170269; /// NM_001170270; /// NM_143180; /// NM_170244; /// NM_170245;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding /
FlyMine data for FBgn0039381.
BDGP gene expression has embryonic in situ data for CG17370: 15 pix of staining in 11 body parts.
BioGrid reports that CG17370 interacts with CG9511 .
VDRC has 3 RNAi stocks for FBgn0039381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 ± 44 of 4 1.60Up
Head47 ± 44 of 4 0.60Down
Eye44 ± 64 of 4 0.59Down
Thoracicoabdominal ganglion92 ± 104 of 4 1.20None
Salivary gland50 ± 130 of 4 0.67None
Crop50 ± 24 of 4 0.70Down
Midgut44 ± 23 of 4 0.60Down
Tubule61 ± 14 of 4 0.80Down
Hindgut39 ± 23 of 4 0.50Down
Heart89 ± 54 of 4 1.18None
Fat body57 ± 84 of 4 0.76None
Ovary122 ± 24 of 4 1.60Up
Testis33 ± 34 of 4 0.40Down
Male accessory glands36 ± 34 of 4 0.50Down
Virgin spermatheca33 ± 11 of 4 0.44Down
Mated spermatheca35 ± 21 of 4 0.47Down
Adult carcass59 ± 32 of 4 0.80None
Larval CNS67 ± 44 of 4 0.89None
Larval Salivary gland50 ± 24 of 4 0.67Down
Larval midgut50 ± 20 of 4 0.67Down
Larval tubule190 ± 44 of 4 2.50Up
Larval hindgut44 ± 44 of 4 0.59Down
Larval fat body96 ± 84 of 4 1.30None
Larval trachea51 ± 64 of 4 0.68Down
Larval carcass71 ± 74 of 4 0.95None
S2 cells (growing)83 ± 14 of 4 1.10None
Whole fly75 ± 64 of 4

Looking for FBgn0039381. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime