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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039395 through 18771 annotations produced 1 hits


(CG14546):

Annotation Number : CG14546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039395
Gbrowse : chr3R:21746763-21748169 (-) // 100.0 //
Probeset : 1628811_at
Accessions : protein= NP_651448;, nucleotide= NM_143191;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039395.
BioGrid reports that CG14546 interacts with CG1856 CG18764 CG2712 CG31029 CG3758 CG4877 CG6276 CG15436 CG17153 CG31224 CG32068 CG3342 CG3838 CG4049 CG4148 CG4394 CG4863 CG4936 CG5303 CG5820 CG6251 CG8942 CG9418 CG9653 .
VDRC has 3 RNAi stocks for FBgn0039395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.10Down
Eye3 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 00 of 4 0.11Down
Crop2 ± 10 of 4 0.10Down
Midgut2 ± 10 of 4 0.10Down
Tubule6 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.08Down
Fat body4 ± 30 of 4 0.09Down
Ovary1 ± 00 of 4 0.00Down
Testis613 ± 114 of 413.30Up
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass7 ± 20 of 4 0.20Down
Larval CNS1 ± 00 of 4 0.03Down
Larval Salivary gland4 ± 10 of 4 0.09Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.10Down
Larval fat body49 ± 233 of 4 1.10None
Larval trachea5 ± 41 of 4 0.11Down
Larval carcass3 ± 10 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly46 ± 34 of 4

Looking for FBgn0039395. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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