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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039402 through 18771 annotations produced 1 hits

vps2 (vps2):

Annotation Number : CG14542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039402
Gbrowse : chr3R:21878546-21879850 (+) // 100.0 //
Probeset : 1623625_at
Accessions : protein= NP_651455;, nucleotide= NM_143198;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039402.
BioGrid reports that CG14542 interacts with CG9779 CG6667 .
TRiP has 1 RNAi stocks for FBgn0039402 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039402 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain324 84 of 4 1.00None
Head358 114 of 4 1.10None
Eye413 224 of 4 1.22None
Thoracicoabdominal ganglion480 204 of 4 1.40Up
Salivary gland578 144 of 4 1.71Up
Crop578 264 of 4 1.70Up
Midgut546 204 of 4 1.60Up
Tubule754 284 of 4 2.20Up
Hindgut559 114 of 4 1.60Up
Heart356 244 of 4 1.05None
Fat body361 204 of 4 1.07None
Ovary371 84 of 4 1.10None
Testis172 54 of 4 0.50Down
Male accessory glands438 84 of 4 1.30Up
Virgin spermatheca529 194 of 4 1.56Up
Mated spermatheca552 224 of 4 1.63Up
Adult carcass327 204 of 4 1.00None
Larval CNS495 174 of 4 1.46Up
Larval Salivary gland873 214 of 4 2.58Up
Larval midgut594 444 of 4 1.75Up
Larval tubule1319 84 of 4 3.90Up
Larval hindgut801 364 of 4 2.37Up
Larval fat body531 474 of 4 1.60Up
Larval trachea765 824 of 4 2.26Up
Larval carcass719 424 of 4 2.12Up
S2 cells (growing)756 24 of 4 2.23Up
Whole fly338 204 of 4

Looking for FBgn0039402. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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