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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039403 through 18771 annotations produced 2 hits



Dak1 /// Sld5 (Dak1 /// Sld5):

Annotation Number : CG14549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028833 /// FBgn0039403
Gbrowse : chr3R:21881408-21882213 (-) // 100.0 //
Probeset : 1636048_at
Accessions : protein= NP_001138113; /// NP_001138114; /// NP_651456; /// NP_651457;, nucleotide= NM_001144641; /// NM_001144642; /// NM_143199; /// NM_143200;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication //
FlyMine data for FBgn0028833 /// FBgn0039403.
BioGrid reports that CG14549 interacts with CG18013 CG9187 CG17295 CG17603 CG1775 CG18316 CG1883 CG3510 CG3949 CG4000 CG18001 CG4550 CG4843 CG6550 CG7203 CG7349 CG7386 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 02 of 4 0.20Down
Head22 ± 30 of 4 0.30Down
Eye20 ± 10 of 4 0.25Down
Thoracicoabdominal ganglion14 ± 12 of 4 0.20Down
Salivary gland16 ± 40 of 4 0.20Down
Crop21 ± 12 of 4 0.30Down
Midgut33 ± 10 of 4 0.40Down
Tubule23 ± 43 of 4 0.30Down
Hindgut17 ± 14 of 4 0.20Down
Heart18 ± 31 of 4 0.22Down
Fat body28 ± 124 of 4 0.35Down
Ovary155 ± 64 of 4 1.90Up
Testis106 ± 44 of 4 1.30Up
Male accessory glands45 ± 54 of 4 0.50Down
Virgin spermatheca29 ± 34 of 4 0.35Down
Mated spermatheca37 ± 34 of 4 0.45Down
Adult carcass18 ± 41 of 4 0.20Down
Larval CNS87 ± 44 of 4 1.04None
Larval Salivary gland108 ± 74 of 4 1.30Up
Larval midgut32 ± 23 of 4 0.39Down
Larval tubule37 ± 14 of 4 0.40Down
Larval hindgut40 ± 33 of 4 0.48Down
Larval fat body34 ± 101 of 4 0.40Down
Larval trachea60 ± 94 of 4 0.73Down
Larval carcass52 ± 34 of 4 0.63Down
S2 cells (growing)55 ± 14 of 4 0.67Down
Whole fly83 ± 34 of 4



Dak1 /// Sld5 (Dak1 /// Sld5):

Annotation Number : CG6092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028833 /// FBgn0039403
Gbrowse : chr3R:21879958-21881210 (-) // 100.0 //
Probeset : 1636539_at
Accessions : protein= NP_001138113; /// NP_001138114; /// NP_651456; /// NP_651457;, nucleotide= NM_001144641; /// NM_001144642; /// NM_143199; /// NM_143200;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication //
FlyMine data for FBgn0028833 /// FBgn0039403.
Homophila reports that CG6092 is a close match (7e-36) to human gene AK1 (NP_000467), a gene associated with Hemolytic anemia due to adenylate kinase deficiency (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain899 ± 234 of 4 1.60Up
Head1216 ± 1284 of 4 2.10Up
Eye2697 ± 574 of 4 4.71Up
Thoracicoabdominal ganglion1313 ± 504 of 4 2.30Up
Salivary gland1450 ± 324 of 4 2.53Up
Crop462 ± 134 of 4 0.80None
Midgut824 ± 144 of 4 1.40Up
Tubule604 ± 144 of 4 1.10Up
Hindgut834 ± 154 of 4 1.50Up
Heart566 ± 184 of 4 0.99None
Fat body541 ± 244 of 4 0.95None
Ovary518 ± 64 of 4 0.90None
Testis109 ± 74 of 4 0.20Down
Male accessory glands1155 ± 494 of 4 2.00Up
Virgin spermatheca450 ± 154 of 4 0.79None
Mated spermatheca536 ± 234 of 4 0.94None
Adult carcass486 ± 174 of 4 0.80None
Larval CNS668 ± 554 of 4 1.17None
Larval Salivary gland3635 ± 1624 of 4 6.34Up
Larval midgut892 ± 364 of 4 1.56Up
Larval tubule610 ± 134 of 4 1.10None
Larval hindgut957 ± 244 of 4 1.67Up
Larval fat body449 ± 384 of 4 0.80None
Larval trachea993 ± 414 of 4 1.73Up
Larval carcass787 ± 484 of 4 1.37Up
S2 cells (growing)877 ± 74 of 4 1.53Up
Whole fly573 ± 554 of 4

Looking for FBgn0039403. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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