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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039404 through 18771 annotations produced 1 hits



(CG14543):

Annotation Number : CG14543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039404
Gbrowse : chr3R:21882362-21883072 (+) // 100.0 //
Probeset : 1638970_at
Accessions : protein= NP_651458;, nucleotide= NM_143201;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039404.
BDGP gene expression has embryonic in situ data for CG14543: 8 pix of staining in 1 body parts.
BioGrid reports that CG14543 interacts with CG3052 CG3936 CG4303 CG5025 CG7548 .
VDRC has 3 RNAi stocks for FBgn0039404 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 24 of 4 0.80None
Head58 ± 34 of 4 0.60Down
Eye61 ± 24 of 4 0.65Down
Thoracicoabdominal ganglion72 ± 44 of 4 0.80None
Salivary gland68 ± 74 of 4 0.73None
Crop72 ± 54 of 4 0.80None
Midgut53 ± 54 of 4 0.60Down
Tubule89 ± 104 of 4 1.00None
Hindgut41 ± 34 of 4 0.40Down
Heart57 ± 44 of 4 0.61Down
Fat body62 ± 104 of 4 0.66Down
Ovary180 ± 64 of 4 1.90Up
Testis89 ± 34 of 4 1.00None
Male accessory glands180 ± 184 of 4 1.90Up
Virgin spermatheca74 ± 24 of 4 0.79None
Mated spermatheca115 ± 74 of 4 1.23None
Adult carcass46 ± 52 of 4 0.50Down
Larval CNS138 ± 134 of 4 1.48Up
Larval Salivary gland134 ± 114 of 4 1.44Up
Larval midgut39 ± 74 of 4 0.42Down
Larval tubule35 ± 24 of 4 0.40Down
Larval hindgut49 ± 54 of 4 0.53Down
Larval fat body40 ± 14 of 4 0.40Down
Larval trachea168 ± 164 of 4 1.80Up
Larval carcass79 ± 154 of 4 0.85None
S2 cells (growing)76 ± 34 of 4 0.81None
Whole fly93 ± 94 of 4

Looking for FBgn0039404. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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