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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039405 through 18771 annotations produced 1 hits



/// (CG14550 /// CG42498):

Annotation Number : CG14550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039405 /// FBgn0260224
Gbrowse : chr3R:21883068-21883945 (-) // 100.0 //
Probeset : 1624071_at
Accessions : protein= NP_001163743; /// NP_651459;, nucleotide= NM_001170272; /// NM_143202;
FlyMine data for FBgn0039405 /// FBgn0260224.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain163 ± 34 of 4 1.00None
Head144 ± 44 of 4 0.90None
Eye368 ± 64 of 4 2.31Up
Thoracicoabdominal ganglion268 ± 54 of 4 1.70Up
Salivary gland121 ± 114 of 4 0.76Down
Crop150 ± 34 of 4 0.90None
Midgut123 ± 34 of 4 0.80Down
Tubule157 ± 64 of 4 1.00None
Hindgut123 ± 84 of 4 0.80Down
Heart104 ± 34 of 4 0.65Down
Fat body92 ± 74 of 4 0.58Down
Ovary310 ± 84 of 4 1.90Up
Testis81 ± 54 of 4 0.50Down
Male accessory glands47 ± 34 of 4 0.30Down
Virgin spermatheca97 ± 54 of 4 0.61Down
Mated spermatheca89 ± 44 of 4 0.56Down
Adult carcass93 ± 74 of 4 0.60Down
Larval CNS330 ± 174 of 4 2.07Up
Larval Salivary gland156 ± 74 of 4 0.98None
Larval midgut111 ± 81 of 4 0.70Down
Larval tubule216 ± 104 of 4 1.40Up
Larval hindgut184 ± 54 of 4 1.16Up
Larval fat body92 ± 44 of 4 0.60Down
Larval trachea224 ± 174 of 4 1.40Up
Larval carcass154 ± 94 of 4 0.97None
S2 cells (growing)213 ± 34 of 4 1.34Up
Whole fly159 ± 64 of 4

Looking for FBgn0039405. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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