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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039406 through 18771 annotations produced 1 hits



Ribosomal protein L34a (RpL34a):

Annotation Number : CG6090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039406
Gbrowse : chr3R:21884131-21884985 (-) // 100.0 //
Probeset : 1641721_a_at
Accessions : protein= NP_651460; /// NP_733136;, nucleotide= NM_143203; /// NM_170257;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0039406.
BioGrid reports that CG6090 interacts with CG8129 .
VDRC has 3 RNAi stocks for FBgn0039406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain680 ± 94 of 4 0.60Down
Head1229 ± 294 of 4 1.00None
Eye1615 ± 134 of 4 1.31Up
Thoracicoabdominal ganglion984 ± 514 of 4 0.80None
Salivary gland1766 ± 504 of 4 1.44Up
Crop1346 ± 104 of 4 1.10None
Midgut1045 ± 264 of 4 0.90None
Tubule240 ± 74 of 4 0.20Down
Hindgut1171 ± 234 of 4 1.00None
Heart1724 ± 684 of 4 1.40Up
Fat body1679 ± 984 of 4 1.37Up
Ovary1248 ± 164 of 4 1.00None
Testis168 ± 44 of 4 0.10Down
Male accessory glands2234 ± 1024 of 4 1.80Up
Virgin spermatheca577 ± 394 of 4 0.47Down
Mated spermatheca606 ± 434 of 4 0.49Down
Adult carcass1166 ± 1064 of 4 0.90None
Larval CNS1140 ± 634 of 4 0.93None
Larval Salivary gland1837 ± 664 of 4 1.50Up
Larval midgut566 ± 174 of 4 0.46Down
Larval tubule886 ± 334 of 4 0.70Down
Larval hindgut1073 ± 294 of 4 0.87None
Larval fat body1412 ± 1574 of 4 1.10None
Larval trachea2565 ± 744 of 4 2.09Up
Larval carcass1533 ± 724 of 4 1.25Up
S2 cells (growing)2020 ± 524 of 4 1.64Up
Whole fly1228 ± 944 of 4

Looking for FBgn0039406. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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