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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039408 through 18771 annotations produced 1 hits



(CG14551):

Annotation Number : CG14551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039408
Gbrowse : chr3R:21887033-21887951 (-) // 100.0 //
Probeset : 1638911_at
Accessions : protein= NP_651462;, nucleotide= NM_143205;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039408.
BioGrid reports that CG14551 interacts with CG4276 CG3069 CG4216 .
VDRC has 2 RNAi stocks for FBgn0039408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head2 ± 10 of 4 0.80None
Eye2 ± 11 of 4 0.72None
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland13 ± 40 of 4 3.68None
Crop2 ± 10 of 4 0.70None
Midgut7 ± 30 of 4 2.00None
Tubule4 ± 00 of 4 1.20None
Hindgut2 ± 00 of 4 0.70None
Heart1 ± 00 of 4 0.45None
Fat body1 ± 10 of 4 0.39None
Ovary2 ± 10 of 4 0.70None
Testis27 ± 04 of 4 7.40Up
Male accessory glands7 ± 20 of 4 2.00None
Virgin spermatheca3 ± 11 of 4 0.97None
Mated spermatheca4 ± 11 of 4 1.09None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS1 ± 00 of 4 0.47None
Larval Salivary gland5 ± 10 of 4 1.43None
Larval midgut3 ± 10 of 4 1.03None
Larval tubule4 ± 10 of 4 1.20None
Larval hindgut2 ± 00 of 4 0.60None
Larval fat body11 ± 22 of 4 3.10Up
Larval trachea2 ± 20 of 4 0.77None
Larval carcass2 ± 00 of 4 0.60None
S2 cells (growing)2 ± 10 of 4 0.75None
Whole fly3 ± 10 of 4

Looking for FBgn0039408. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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