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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039413 through 18771 annotations produced 1 hits


(CG14556):

Annotation Number : CG14556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039413
Gbrowse : chr3R:21952514-21953453 (+) // 100.0 //
Probeset : 1639434_at
Accessions : protein= NP_651464;, nucleotide= NM_143207;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039413.
BioGrid reports that CG14556 interacts with CG15124 CG4325 CG3938 CG4843 CG6251 CG6856 .
VDRC has 1 RNAi stocks for FBgn0039413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland10 ± 40 of 4 0.20Down
Crop7 ± 11 of 4 0.10Down
Midgut5 ± 00 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut6 ± 01 of 4 0.10Down
Heart2 ± 00 of 4 0.05Down
Fat body12 ± 41 of 4 0.24Down
Ovary2 ± 10 of 4 0.00Down
Testis636 ± 64 of 412.30Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca9 ± 11 of 4 0.19Down
Mated spermatheca15 ± 24 of 4 0.29Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS4 ± 22 of 4 0.08Down
Larval Salivary gland6 ± 10 of 4 0.12Down
Larval midgut2 ± 10 of 4 0.05Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.08Down
Larval fat body68 ± 262 of 4 1.30None
Larval trachea5 ± 72 of 4 0.12Down
Larval carcass7 ± 10 of 4 0.14Down
S2 cells (growing)2 ± 00 of 4 0.05Down
Whole fly51 ± 34 of 4

Looking for FBgn0039413. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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