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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039417 through 18771 annotations produced 1 hits



(CG6073):

Annotation Number : CG6073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039417
Gbrowse : chr3R:22012736-22014526 (-) // 100.0 //
Probeset : 1633222_at
Accessions : protein= NP_651468;, nucleotide= NM_143211;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0039417.
BDGP gene expression has embryonic in situ data for CG6073: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0039417 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 14 of 4 0.90None
Head38 54 of 4 0.70Down
Eye21 04 of 4 0.36Down
Thoracicoabdominal ganglion60 44 of 4 1.00None
Salivary gland30 91 of 4 0.51Down
Crop56 44 of 4 1.00None
Midgut58 44 of 4 1.00None
Tubule30 33 of 4 0.50Down
Hindgut35 24 of 4 0.60Down
Heart24 24 of 4 0.43Down
Fat body41 24 of 4 0.70Down
Ovary151 74 of 4 2.60Up
Testis29 44 of 4 0.50Down
Male accessory glands116 144 of 4 2.00Up
Virgin spermatheca60 04 of 4 1.04None
Mated spermatheca79 64 of 4 1.36Up
Adult carcass34 24 of 4 0.60Down
Larval CNS57 24 of 4 0.98None
Larval Salivary gland24 04 of 4 0.42Down
Larval midgut34 24 of 4 0.59Down
Larval tubule15 22 of 4 0.30Down
Larval hindgut33 34 of 4 0.57Down
Larval fat body19 23 of 4 0.30Down
Larval trachea36 54 of 4 0.63Down
Larval carcass40 44 of 4 0.69Down
S2 cells (growing)25 04 of 4 0.44Down
Whole fly58 54 of 4

Looking for FBgn0039417. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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