Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039436 through 18771 annotations produced 2 hits



CG6478 (TwdlB):

Annotation Number : CG6478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039436
Gbrowse : chr3R:22448172-22449270 (-) // 100.0 //
Probeset : 1626765_at
Accessions : protein= NP_651486;, nucleotide= NM_143229;
FlyMine data for FBgn0039436.
BDGP gene expression has embryonic in situ data for CG6478: 14 pix of staining in 3 body parts.
BioGrid reports that CG6478 interacts with CG6891 CG7021 CG8092 CG8614 .
VDRC has 2 RNAi stocks for FBgn0039436 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 11 of 4 0.10None
Head2 00 of 4 0.10None
Eye4 01 of 4 0.11None
Thoracicoabdominal ganglion4 11 of 4 0.10None
Salivary gland9 30 of 4 0.21None
Crop9 12 of 4 0.20None
Midgut5 11 of 4 0.10None
Tubule5 01 of 4 0.10Down
Hindgut7 22 of 4 0.20None
Heart4 10 of 4 0.09None
Fat body2 20 of 4 0.05None
Ovary3 01 of 4 0.10None
Testis3 01 of 4 0.10None
Male accessory glands7 30 of 4 0.20None
Virgin spermatheca2 00 of 4 0.05None
Mated spermatheca2 10 of 4 0.07None
Adult carcass10 32 of 4 0.20None
Larval CNS3 11 of 4 0.08None
Larval Salivary gland3 20 of 4 0.08None
Larval midgut4 00 of 4 0.10None
Larval tubule5 12 of 4 0.10None
Larval hindgut3 10 of 4 0.07None
Larval fat body4 10 of 4 0.10None
Larval trachea2 20 of 4 0.05None
Larval carcass2 00 of 4 0.06None
S2 cells (growing)4 02 of 4 0.09None
Whole fly44 204 of 4



CG6478 /// CG6447 (TwdlB /// TwdlL):

Annotation Number : CG6447
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039437
Gbrowse : chr3R:22450301-22451374 (-) // 100.0 //
Probeset : 1630098_a_at
Accessions : protein= NP_733158; /// NP_733159;, nucleotide= NM_170279; /// NM_170280;
FlyMine data for FBgn0039437.
BDGP gene expression has embryonic in situ data for CG6447: 27 pix of staining in 4 body parts.
BioGrid reports that CG6447 interacts with CG6891 CG7021 CG8092 CG8614 .
VDRC has 3 RNAi stocks for FBgn0039437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10None
Head1 00 of 4 0.00None
Eye2 10 of 4 0.07None
Thoracicoabdominal ganglion1 10 of 4 0.00None
Salivary gland2 00 of 4 0.06None
Crop8 10 of 4 0.20None
Midgut6 20 of 4 0.20None
Tubule4 00 of 4 0.10Down
Hindgut6 31 of 4 0.20None
Heart1 00 of 4 0.03None
Fat body8 00 of 4 0.20None
Ovary2 00 of 4 0.10None
Testis25 13 of 4 0.60None
Male accessory glands5 30 of 4 0.10None
Virgin spermatheca1 00 of 4 0.04None
Mated spermatheca5 20 of 4 0.13None
Adult carcass4 30 of 4 0.10None
Larval CNS0 00 of 4 0.02None
Larval Salivary gland2 10 of 4 0.07None
Larval midgut2 00 of 4 0.07None
Larval tubule6 20 of 4 0.10None
Larval hindgut2 00 of 4 0.06None
Larval fat body13 30 of 4 0.30None
Larval trachea7 10 of 4 0.17None
Larval carcass5 10 of 4 0.13None
S2 cells (growing)2 00 of 4 0.06None
Whole fly42 202 of 4

Looking for FBgn0039436. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime