FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039436 through 18771 annotations produced 2 hits

CG6478 (TwdlB):

Annotation Number : CG6478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039436
Gbrowse : chr3R:22448172-22449270 (-) // 100.0 //
Probeset : 1626765_at
Accessions : protein= NP_651486;, nucleotide= NM_143229;
FlyMine data for FBgn0039436.
BDGP gene expression has embryonic in situ data for CG6478: 14 pix of staining in 3 body parts.
BioGrid reports that CG6478 interacts with CG6891 CG7021 CG8092 CG8614 .
VDRC has 2 RNAi stocks for FBgn0039436 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	1 of 4	0.10	None
Head	2 ± 0	0 of 4	0.10	None
Eye	4 ± 0	1 of 4	0.11	None
Thoracicoabdominal ganglion	4 ± 1	1 of 4	0.10	None
Salivary gland	9 ± 3	0 of 4	0.21	None
Crop	9 ± 1	2 of 4	0.20	None
Midgut	5 ± 1	1 of 4	0.10	None
Tubule	5 ± 0	1 of 4	0.10	Down
Hindgut	7 ± 2	2 of 4	0.20	None
Heart	4 ± 1	0 of 4	0.09	None
Fat body	2 ± 2	0 of 4	0.05	None
Ovary	3 ± 0	1 of 4	0.10	None
Testis	3 ± 0	1 of 4	0.10	None
Male accessory glands	7 ± 3	0 of 4	0.20	None
Virgin spermatheca	2 ± 0	0 of 4	0.05	None
Mated spermatheca	2 ± 1	0 of 4	0.07	None
Adult carcass	10 ± 3	2 of 4	0.20	None
Larval CNS	3 ± 1	1 of 4	0.08	None
Larval Salivary gland	3 ± 2	0 of 4	0.08	None
Larval midgut	4 ± 0	0 of 4	0.10	None
Larval tubule	5 ± 1	2 of 4	0.10	None
Larval hindgut	3 ± 1	0 of 4	0.07	None
Larval fat body	4 ± 1	0 of 4	0.10	None
Larval trachea	2 ± 2	0 of 4	0.05	None
Larval carcass	2 ± 0	0 of 4	0.06	None
S2 cells (growing)	4 ± 0	2 of 4	0.09	None
Whole fly	44 ± 20	4 of 4

CG6478 /// CG6447 (TwdlB /// TwdlL):

Annotation Number : CG6447
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039437
Gbrowse : chr3R:22450301-22451374 (-) // 100.0 //
Probeset : 1630098_a_at
Accessions : protein= NP_733158; /// NP_733159;, nucleotide= NM_170279; /// NM_170280;
FlyMine data for FBgn0039437.
BDGP gene expression has embryonic in situ data for CG6447: 27 pix of staining in 4 body parts.
BioGrid reports that CG6447 interacts with CG6891 CG7021 CG8092 CG8614 .
VDRC has 3 RNAi stocks for FBgn0039437 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.10	None
Head	1 ± 0	0 of 4	0.00	None
Eye	2 ± 1	0 of 4	0.07	None
Thoracicoabdominal ganglion	1 ± 1	0 of 4	0.00	None
Salivary gland	2 ± 0	0 of 4	0.06	None
Crop	8 ± 1	0 of 4	0.20	None
Midgut	6 ± 2	0 of 4	0.20	None
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	6 ± 3	1 of 4	0.20	None
Heart	1 ± 0	0 of 4	0.03	None
Fat body	8 ± 0	0 of 4	0.20	None
Ovary	2 ± 0	0 of 4	0.10	None
Testis	25 ± 1	3 of 4	0.60	None
Male accessory glands	5 ± 3	0 of 4	0.10	None
Virgin spermatheca	1 ± 0	0 of 4	0.04	None
Mated spermatheca	5 ± 2	0 of 4	0.13	None
Adult carcass	4 ± 3	0 of 4	0.10	None
Larval CNS	0 ± 0	0 of 4	0.02	None
Larval Salivary gland	2 ± 1	0 of 4	0.07	None
Larval midgut	2 ± 0	0 of 4	0.07	None
Larval tubule	6 ± 2	0 of 4	0.10	None
Larval hindgut	2 ± 0	0 of 4	0.06	None
Larval fat body	13 ± 3	0 of 4	0.30	None
Larval trachea	7 ± 1	0 of 4	0.17	None
Larval carcass	5 ± 1	0 of 4	0.13	None
S2 cells (growing)	2 ± 0	0 of 4	0.06	None
Whole fly	42 ± 20	2 of 4

Looking for FBgn0039436. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720