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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039438 through 18771 annotations produced 1 hits

CG6452 (TwdlO):

Annotation Number : CG6452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039438
Gbrowse : chr3R:22451729-22452419 (-) // 100.0 //
Probeset : 1630126_at
Accessions : protein= NP_651487;, nucleotide= NM_143230;
FlyMine data for FBgn0039438.
VDRC has 4 RNAi stocks for FBgn0039438 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.10None
Head1 00 of 4 0.80None
Eye0 00 of 4 0.56None
Thoracicoabdominal ganglion1 00 of 4 0.90None
Salivary gland1 00 of 4 1.29None
Crop1 00 of 4 0.90None
Midgut1 00 of 4 1.20None
Tubule1 00 of 4 0.80None
Hindgut1 00 of 4 0.70None
Heart2 10 of 4 1.51None
Fat body1 00 of 4 0.76None
Ovary1 00 of 4 0.80None
Testis0 00 of 4 0.60None
Male accessory glands1 00 of 4 1.00None
Virgin spermatheca1 00 of 4 0.73None
Mated spermatheca0 00 of 4 0.59None
Adult carcass1 00 of 4 1.20None
Larval CNS1 00 of 4 1.12None
Larval Salivary gland1 00 of 4 1.15None
Larval midgut1 00 of 4 1.27None
Larval tubule1 00 of 4 0.70None
Larval hindgut1 00 of 4 0.80None
Larval fat body3 00 of 4 2.40Up
Larval trachea1 00 of 4 0.71None
Larval carcass122 453 of 483.03None
S2 cells (growing)0 00 of 4 0.54None
Whole fly1 00 of 4

Looking for FBgn0039438. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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