FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039444 through 18771 annotations produced 1 hits

CG14243 (TwdlD):

Annotation Number : CG14243
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039444
Gbrowse : chr3R:22465747-22466779 (+) // 100.0 //
Probeset : 1636097_at
Accessions : protein= NP_651492;, nucleotide= NM_143235;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042302 // structural constituent of cuticle // inf
FlyMine data for FBgn0039444.
BDGP gene expression has embryonic in situ data for CG14243: 15 pix of staining in 4 body parts.
BioGrid reports that CG14243 interacts with CG32068 CG32972 CG5094 CG5471 CG18584 CG4835 CG6779 CG8198 CG8292 .
VDRC has 2 RNAi stocks for FBgn0039444 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.20	None
Head	3 ± 1	0 of 4	0.40	None
Eye	5 ± 1	0 of 4	0.83	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.30	None
Salivary gland	8 ± 2	0 of 4	1.13	None
Crop	10 ± 4	0 of 4	1.40	None
Midgut	6 ± 3	0 of 4	0.90	None
Tubule	2 ± 0	0 of 4	0.30	Down
Hindgut	2 ± 0	0 of 4	0.30	None
Heart	4 ± 1	0 of 4	0.60	None
Fat body	1 ± 1	0 of 4	0.25	None
Ovary	1 ± 0	0 of 4	0.20	None
Testis	2 ± 0	0 of 4	0.30	None
Male accessory glands	9 ± 3	0 of 4	1.30	None
Virgin spermatheca	6 ± 1	0 of 4	0.85	None
Mated spermatheca	5 ± 2	0 of 4	0.71	None
Adult carcass	7 ± 3	0 of 4	1.00	None
Larval CNS	1 ± 0	0 of 4	0.18	None
Larval Salivary gland	7 ± 5	0 of 4	1.08	None
Larval midgut	5 ± 1	0 of 4	0.80	None
Larval tubule	5 ± 2	0 of 4	0.80	None
Larval hindgut	1 ± 0	0 of 4	0.22	None
Larval fat body	6 ± 3	0 of 4	1.00	None
Larval trachea	5 ± 3	0 of 4	0.71	None
Larval carcass	7 ± 1	1 of 4	1.10	None
S2 cells (growing)	1 ± 0	0 of 4	0.25	None
Whole fly	7 ± 2	1 of 4

Looking for FBgn0039444. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720