FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039467 through 18771 annotations produced 1 hits

(CG14253):

Annotation Number : CG14253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039467
Gbrowse : chr3R:22804265-22811431 (+) // 100.0 //
Probeset : 1625563_s_at
Accessions : protein= NP_651517; /// NP_733179; /// NP_733180; /// NP_733181; /// NP_733182;, nucleotide= NM_143260; /// NM_170300; /// NM_170301; /// NM_170302; /// NM_170303;
FlyMine data for FBgn0039467.
BDGP gene expression has embryonic in situ data for CG14253: 33 pix of staining in 13 body parts.
BioGrid reports that CG14253 interacts with CG8322 .
VDRC has 4 RNAi stocks for FBgn0039467 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 1	4 of 4	1.20	None
Head	29 ± 3	4 of 4	1.40	None
Eye	16 ± 2	3 of 4	0.77	None
Thoracicoabdominal ganglion	32 ± 3	4 of 4	1.50	Up
Salivary gland	27 ± 2	2 of 4	1.28	None
Crop	186 ± 14	4 of 4	8.60	Up
Midgut	35 ± 2	3 of 4	1.70	Up
Tubule	13 ± 1	2 of 4	0.60	Down
Hindgut	296 ± 8	4 of 4	13.70	Up
Heart	53 ± 1	4 of 4	2.46	Up
Fat body	29 ± 6	3 of 4	1.34	None
Ovary	7 ± 1	2 of 4	0.30	Down
Testis	12 ± 0	4 of 4	0.60	None
Male accessory glands	27 ± 4	4 of 4	1.20	None
Virgin spermatheca	44 ± 4	4 of 4	2.03	Up
Mated spermatheca	63 ± 7	4 of 4	2.91	Up
Adult carcass	39 ± 0	4 of 4	1.80	Up
Larval CNS	35 ± 8	4 of 4	1.64	Up
Larval Salivary gland	13 ± 1	0 of 4	0.62	None
Larval midgut	27 ± 3	4 of 4	1.27	None
Larval tubule	19 ± 1	4 of 4	0.90	None
Larval hindgut	76 ± 7	4 of 4	3.53	Up
Larval fat body	19 ± 3	4 of 4	0.90	None
Larval trachea	71 ± 14	4 of 4	3.29	Up
Larval carcass	141 ± 22	4 of 4	6.51	Up
S2 cells (growing)	418 ± 11	4 of 4	19.31	Up
Whole fly	21 ± 3	4 of 4

Looking for FBgn0039467. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720