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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039471 through 18771 annotations produced 1 hits


Annotation Number : CG6295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039471
Gbrowse : chr3R:22831620-22832777 (-) // 100.0 //
Probeset : 1635868_at
Accessions : protein= NP_651521;, nucleotide= NM_143264;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // infe
FlyMine data for FBgn0039471.
BDGP gene expression has embryonic in situ data for CG6295: 4 pix of staining in 1 body parts.
Homophila reports that CG6295 is a close match (2e-25) to human gene HDLCQ12;HL;LIPC;LIPH (NP_000227), a gene associated with Hepatic lipase deficiency (3);[High density lipoprotein cholesterol level QTL 12] (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
VDRC has 3 RNAi stocks for FBgn0039471 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head21 201 of 4 0.00Down
Eye7 40 of 4 0.01Down
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland4 10 of 4 0.00Down
Crop17 70 of 4 0.00Down
Midgut5460 2504 of 4 6.10Up
Tubule1 00 of 4 0.00Down
Hindgut4 30 of 4 0.00Down
Heart4 20 of 4 0.01Down
Fat body2 20 of 4 0.00Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.00Down
Mated spermatheca4 20 of 4 0.01Down
Adult carcass15 20 of 4 0.00Down
Larval CNS2 10 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut3234 5454 of 4 3.61Up
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.00Down
Larval fat body7 30 of 4 0.00Down
Larval trachea3 20 of 4 0.00Down
Larval carcass3 00 of 4 0.00Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly897 1894 of 4

Looking for FBgn0039471. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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