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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039479 through 18771 annotations produced 1 hits



(CG14257):

Annotation Number : CG14257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039479
Gbrowse : chr3R:22903990-22907939 (+) // 100.0 //
Probeset : 1634392_at
Accessions : protein= NP_651528;, nucleotide= NM_143271;
FlyMine data for FBgn0039479.
VDRC has 2 RNAi stocks for FBgn0039479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40None
Head6 ± 10 of 4 0.60None
Eye9 ± 00 of 4 0.92None
Thoracicoabdominal ganglion4 ± 10 of 4 0.40None
Salivary gland14 ± 50 of 4 1.41None
Crop8 ± 20 of 4 0.90None
Midgut5 ± 20 of 4 0.50None
Tubule4 ± 10 of 4 0.40Down
Hindgut21 ± 30 of 4 2.10Up
Heart4 ± 10 of 4 0.43Down
Fat body13 ± 20 of 4 1.28None
Ovary2 ± 00 of 4 0.30Down
Testis3 ± 10 of 4 0.30Down
Male accessory glands9 ± 20 of 4 0.90None
Virgin spermatheca3 ± 00 of 4 0.36Down
Mated spermatheca4 ± 10 of 4 0.41Down
Adult carcass12 ± 10 of 4 1.20None
Larval CNS3 ± 10 of 4 0.30Down
Larval Salivary gland2 ± 10 of 4 0.27Down
Larval midgut5 ± 10 of 4 0.56None
Larval tubule3 ± 00 of 4 0.40Down
Larval hindgut10 ± 20 of 4 1.04None
Larval fat body11 ± 30 of 4 1.10None
Larval trachea6 ± 20 of 4 0.65None
Larval carcass3 ± 00 of 4 0.35Down
S2 cells (growing)4 ± 20 of 4 0.45None
Whole fly10 ± 10 of 4

Looking for FBgn0039479. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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