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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039480 through 18771 annotations produced 1 hits



CG6131 (Cpr97Ea):

Annotation Number : CG6131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039480
Gbrowse : chr3R:22908853-22912341 (-) // 100.0 //
Probeset : 1630171_at
Accessions : protein= NP_651529;, nucleotide= NM_143272;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0039480.
BDGP gene expression has embryonic in situ data for CG6131: 19 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0039480 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.50None
Head8 ± 10 of 4 1.20None
Eye10 ± 21 of 4 1.45None
Thoracicoabdominal ganglion3 ± 10 of 4 0.50None
Salivary gland12 ± 30 of 4 1.79None
Crop6 ± 30 of 4 0.90None
Midgut16 ± 31 of 4 2.30None
Tubule7 ± 00 of 4 1.00None
Hindgut8 ± 30 of 4 1.10None
Heart14 ± 61 of 4 2.01None
Fat body5 ± 20 of 4 0.71None
Ovary4 ± 10 of 4 0.60None
Testis8 ± 00 of 4 1.10None
Male accessory glands10 ± 30 of 4 1.40None
Virgin spermatheca6 ± 20 of 4 0.87None
Mated spermatheca3 ± 00 of 4 0.45None
Adult carcass9 ± 30 of 4 1.40None
Larval CNS4 ± 30 of 4 0.59None
Larval Salivary gland7 ± 20 of 4 1.11None
Larval midgut9 ± 30 of 4 1.38None
Larval tubule10 ± 20 of 4 1.50None
Larval hindgut12 ± 10 of 4 1.76None
Larval fat body7 ± 00 of 4 1.00None
Larval trachea436 ± 1724 of 461.24Up
Larval carcass36 ± 51 of 4 5.06Up
S2 cells (growing)33 ± 34 of 4 4.76Up
Whole fly7 ± 10 of 4

Looking for FBgn0039480. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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