FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039488 through 18771 annotations produced 1 hits

/// Modifier67.2 (CG6066 /// mod(mdg4)):

Annotation Number : CG6066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039488
Gbrowse : chr3R:22940952-22942398 (-) // 100.0 //
Probeset : 1637260_at
Accessions : protein= NP_001097856; /// NP_001097857; /// NP_001097858; /// NP_524936; /// NP_651538; /// NP_732619; /// NP_732620; /// NP_732621; /// NP_732622; /// NP_732623; /// NP_732624; /// NP_732625; /// NP_732626; /// NP_732627; /// NP_732628; /// NP_732629; /// NP_732630; /// NP_732631; /// NP_732632; /// NP_732633; /// NP_732634; /// NP_732635; /// NP_732636; /// NP_788698; /// NP_788699; /// NP_788700; /// NP_788701; /// NP_788702; /// NP_788703; /// NP_788704;, nucleotide= NM_001104386; /// NM_001104387; /// NM_001104388; /// NM_080197; /// NM_143281; /// NM_163877; /// NM_163878; /// NM_163879; /// NM_163880; /// NM_163881; /// NM_163882; /// NM_163883; /// NM_163884; /// NM_163885; /// NM_163886; /// NM_163887; /// NM_163888; /// NM_163889; /// NM_163890; /// NM_163891; /// NM_163892; /// NM_163893; /// NM_163894; /// NM_176521; /// NM_176522; /// NM_176523; /// NM_176524; /// NM_176525; /// NM_176526; /// NM_176527;
Pathway : via spliceosome // inferred by curator /// 0001672 // regulation of chromatin assembly or disassembly // inferred from
Interpro : 0000785 // chromatin // inferred from mutant phenotype /// 0000794 // condensed nuclear chromosome // inferred from dire
FlyMine data for FBgn0039488.
BDGP gene expression has embryonic in situ data for mod(mdg4): 15 pix of staining in 11 body parts.
BioGrid reports that CG6066 interacts with CG6843 .
TRiP has 1 RNAi stocks for FBgn0039488 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039488 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	39 ± 1	4 of 4	0.60	Down
Head	41 ± 3	4 of 4	0.70	Down
Eye	33 ± 3	4 of 4	0.53	Down
Thoracicoabdominal ganglion	47 ± 5	4 of 4	0.70	None
Salivary gland	46 ± 7	4 of 4	0.74	None
Crop	55 ± 2	4 of 4	0.90	None
Midgut	47 ± 4	2 of 4	0.80	Down
Tubule	37 ± 1	4 of 4	0.60	Down
Hindgut	53 ± 3	4 of 4	0.90	None
Heart	37 ± 3	4 of 4	0.60	Down
Fat body	52 ± 10	4 of 4	0.84	None
Ovary	136 ± 2	4 of 4	2.20	Up
Testis	23 ± 1	4 of 4	0.40	Down
Male accessory glands	74 ± 3	4 of 4	1.20	Up
Virgin spermatheca	43 ± 3	4 of 4	0.69	Down
Mated spermatheca	51 ± 3	4 of 4	0.81	None
Adult carcass	40 ± 5	4 of 4	0.60	Down
Larval CNS	101 ± 8	4 of 4	1.62	Up
Larval Salivary gland	75 ± 3	4 of 4	1.20	Up
Larval midgut	42 ± 2	0 of 4	0.67	Down
Larval tubule	50 ± 3	4 of 4	0.80	Down
Larval hindgut	52 ± 2	4 of 4	0.83	Down
Larval fat body	39 ± 3	4 of 4	0.60	Down
Larval trachea	75 ± 11	4 of 4	1.21	None
Larval carcass	61 ± 7	4 of 4	0.98	None
S2 cells (growing)	74 ± 1	4 of 4	1.18	Up
Whole fly	62 ± 3	4 of 4

Looking for FBgn0039488. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720