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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039503 through 18771 annotations produced 1 hits


(CG14262):

Annotation Number : CG14262
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039503
Gbrowse : chr3R:23090048-23091152 (-) // 100.0 //
Probeset : 1628852_at
Accessions : protein= NP_651550;, nucleotide= NM_143293;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0039503.
BDGP gene expression has embryonic in situ data for CG14262: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0039503 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland12 ± 30 of 4 0.24Down
Crop5 ± 20 of 4 0.10Down
Midgut8 ± 20 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut6 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.03Down
Fat body9 ± 30 of 4 0.17Down
Ovary1 ± 00 of 4 0.00Down
Testis592 ± 104 of 410.90Up
Male accessory glands7 ± 10 of 4 0.10Down
Virgin spermatheca6 ± 00 of 4 0.12Down
Mated spermatheca7 ± 10 of 4 0.14Down
Adult carcass7 ± 30 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.09Down
Larval Salivary gland4 ± 10 of 4 0.08Down
Larval midgut8 ± 10 of 4 0.16Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.11Down
Larval fat body47 ± 192 of 4 0.90None
Larval trachea4 ± 20 of 4 0.09Down
Larval carcass4 ± 10 of 4 0.09Down
S2 cells (growing)4 ± 00 of 4 0.07Down
Whole fly54 ± 14 of 4

Looking for FBgn0039503. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime