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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039508 through 18771 annotations produced 1 hits



(CG3368):

Annotation Number : CG3368
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039508
Gbrowse : chr3R:23109497-23113170 (+) // 100.0 //
Probeset : 1624996_at
Accessions : protein= NP_651555;, nucleotide= NM_143298;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0039508.
BioGrid reports that CG3368 interacts with CG5359 CG6025 .
VDRC has 1 RNAi stocks for FBgn0039508 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 ± 64 of 4 1.40Up
Head69 ± 24 of 4 0.70Down
Eye62 ± 14 of 4 0.60Down
Thoracicoabdominal ganglion160 ± 34 of 4 1.50Up
Salivary gland71 ± 34 of 4 0.69Down
Crop77 ± 34 of 4 0.70Down
Midgut68 ± 44 of 4 0.70Down
Tubule116 ± 64 of 4 1.10Up
Hindgut71 ± 64 of 4 0.70Down
Heart77 ± 14 of 4 0.75Down
Fat body79 ± 64 of 4 0.77Down
Ovary163 ± 24 of 4 1.60Up
Testis38 ± 34 of 4 0.40Down
Male accessory glands142 ± 134 of 4 1.40None
Virgin spermatheca92 ± 34 of 4 0.89None
Mated spermatheca91 ± 74 of 4 0.88None
Adult carcass67 ± 34 of 4 0.70Down
Larval CNS246 ± 94 of 4 2.38Up
Larval Salivary gland107 ± 24 of 4 1.04None
Larval midgut107 ± 54 of 4 1.04None
Larval tubule86 ± 34 of 4 0.80Down
Larval hindgut106 ± 24 of 4 1.02None
Larval fat body59 ± 34 of 4 0.60Down
Larval trachea208 ± 184 of 4 2.00Up
Larval carcass102 ± 34 of 4 0.99None
S2 cells (growing)269 ± 124 of 4 2.59Up
Whole fly103 ± 44 of 4

Looking for FBgn0039508. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime