Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039519 through 18771 annotations produced 1 hits



Cyp6a18 (Cyp6a18):

Annotation Number : CG13977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039519
Gbrowse : chr3R:23304398-23306190 (+) // 100.0 //
Probeset : 1633947_at
Accessions : protein= NP_651563;, nucleotide= NM_143306;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0039519.
BDGP gene expression has embryonic in situ data for Cyp6a18: 11 pix of staining in 3 body parts.
Homophila reports that CG13977 is a close match (2e-11) to human gene CYP2C8 (NP_000761), a gene associated with Rhabdomyolysis, cerivastatin-induced (3).
VDRC has 2 RNAi stocks for FBgn0039519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.04Down
Crop3 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule2635 ± 3054 of 448.70Up
Hindgut70 ± 84 of 4 1.30None
Heart1 ± 00 of 4 0.02Down
Fat body11 ± 161 of 4 0.21Down
Ovary1 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.04Down
Mated spermatheca0 ± 00 of 4 0.01Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.06Down
Larval midgut3 ± 10 of 4 0.07Down
Larval tubule1151 ± 774 of 421.30Up
Larval hindgut20 ± 54 of 4 0.38Down
Larval fat body3 ± 00 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly54 ± 44 of 4

Looking for FBgn0039519. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime