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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039522 through 18771 annotations produced 1 hits



(CG13972):

Annotation Number : CG13972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039522
Gbrowse : chr3R:23341632-23342979 (-) // 100.0 //
Probeset : 1635516_at
Accessions : protein= NP_651566;, nucleotide= NM_143309;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039522.
BioGrid reports that CG13972 interacts with CG8472 .
VDRC has 5 RNAi stocks for FBgn0039522 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.80None
Head1 ± 00 of 4 1.80Up
Eye0 ± 00 of 4 1.00None
Thoracicoabdominal ganglion0 ± 00 of 4 1.20None
Salivary gland2 ± 00 of 4 4.03None
Crop0 ± 00 of 4 1.10None
Midgut1 ± 00 of 4 2.00Up
Tubule1 ± 00 of 4 1.30Up
Hindgut1 ± 00 of 4 1.30None
Heart0 ± 00 of 4 0.93None
Fat body2 ± 20 of 4 3.83None
Ovary0 ± 00 of 4 1.00None
Testis0 ± 00 of 4 0.90None
Male accessory glands1 ± 00 of 4 1.70None
Virgin spermatheca1 ± 00 of 4 1.62None
Mated spermatheca0 ± 00 of 4 1.14None
Adult carcass2 ± 00 of 4 3.70None
Larval CNS0 ± 00 of 4 1.07None
Larval Salivary gland2 ± 10 of 4 2.90None
Larval midgut1 ± 00 of 4 1.76Up
Larval tubule1 ± 00 of 4 1.30None
Larval hindgut0 ± 00 of 4 0.97None
Larval fat body1 ± 00 of 4 1.50None
Larval trachea1 ± 00 of 4 2.45Up
Larval carcass0 ± 00 of 4 1.31None
S2 cells (growing)0 ± 00 of 4 1.21None
Whole fly0 ± 00 of 4

Looking for FBgn0039522. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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