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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039523 through 18771 annotations produced 2 hits



(CG12885):

Annotation Number : CG12885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039523
Gbrowse : chr3R:23356034-23359655 (+) // 100.0 //
Probeset : 1625192_at
Accessions : protein= NP_651567;, nucleotide= NM_143310;
FlyMine data for FBgn0039523.
VDRC has 2 RNAi stocks for FBgn0039523 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.80None
Head14 ± 14 of 4 3.90Up
Eye4 ± 00 of 4 1.28None
Thoracicoabdominal ganglion5 ± 10 of 4 1.50None
Salivary gland5 ± 20 of 4 1.52None
Crop2 ± 00 of 4 0.60None
Midgut3 ± 10 of 4 1.00None
Tubule2 ± 00 of 4 0.60Down
Hindgut2 ± 00 of 4 0.60None
Heart2 ± 00 of 4 0.60None
Fat body4 ± 10 of 4 1.24None
Ovary1 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.20None
Male accessory glands2 ± 00 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.38None
Mated spermatheca2 ± 10 of 4 0.64None
Adult carcass12 ± 10 of 4 3.40Up
Larval CNS2 ± 10 of 4 0.57None
Larval Salivary gland3 ± 10 of 4 0.81None
Larval midgut0 ± 00 of 4 0.22None
Larval tubule2 ± 10 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.40None
Larval fat body0 ± 00 of 4 0.20None
Larval trachea1 ± 00 of 4 0.30None
Larval carcass1 ± 00 of 4 0.38None
S2 cells (growing)1 ± 00 of 4 0.35None
Whole fly3 ± 11 of 4



(CG12885):

Annotation Number : S.C3R003163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039523
Gbrowse : chr3R:23346666-23356732 (+) // 100.0 //
Probeset : 1630379_s_at
Accessions : protein= NP_651567;, nucleotide= NM_143310;
FlyMine data for FBgn0039523.
VDRC has 2 RNAi stocks for FBgn0039523 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.60None
Head1 ± 00 of 4 0.80None
Eye1 ± 00 of 4 0.75None
Thoracicoabdominal ganglion1 ± 00 of 4 0.90None
Salivary gland3 ± 00 of 4 2.57None
Crop1 ± 00 of 4 1.20None
Midgut0 ± 00 of 4 0.40None
Tubule2 ± 00 of 4 1.40Up
Hindgut0 ± 00 of 4 0.30None
Heart2 ± 00 of 4 1.35None
Fat body8 ± 40 of 4 5.92Up
Ovary0 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.60None
Male accessory glands0 ± 00 of 4 0.50None
Virgin spermatheca7 ± 20 of 4 4.82None
Mated spermatheca11 ± 10 of 4 7.88Up
Adult carcass2 ± 00 of 4 1.80None
Larval CNS0 ± 00 of 4 0.62None
Larval Salivary gland1 ± 00 of 4 1.17None
Larval midgut0 ± 00 of 4 0.37None
Larval tubule1 ± 00 of 4 0.70None
Larval hindgut0 ± 00 of 4 0.52None
Larval fat body4 ± 20 of 4 2.70None
Larval trachea0 ± 00 of 4 0.32None
Larval carcass2 ± 00 of 4 1.85None
S2 cells (growing)0 ± 00 of 4 0.53None
Whole fly1 ± 00 of 4

Looking for FBgn0039523. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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