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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039530 through 18771 annotations produced 1 hits



dmWSBa Tubby-like (Tusp):

Annotation Number : CG5586
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039530
Gbrowse : chr3R:23454835-23459748 (+) // 100.0 //
Probeset : 1639822_at
Accessions : protein= NP_651573;, nucleotide= NM_143316;
FlyMine data for FBgn0039530.
Homophila reports that CG5586 is a close match (4e-15) to human gene RP14;TULP1 (NP_003313), a gene associated with Retinitis pigmentosa-14, 600132 (3).
VDRC has 2 RNAi stocks for FBgn0039530 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 ± 64 of 410.60Up
Head30 ± 44 of 4 3.40Up
Eye23 ± 14 of 4 2.60Up
Thoracicoabdominal ganglion73 ± 64 of 4 8.00Up
Salivary gland5 ± 30 of 4 0.55None
Crop20 ± 34 of 4 2.20Up
Midgut2 ± 10 of 4 0.30Down
Tubule3 ± 00 of 4 0.40Down
Hindgut3 ± 10 of 4 0.30Down
Heart2 ± 00 of 4 0.28Down
Fat body1 ± 00 of 4 0.13Down
Ovary5 ± 10 of 4 0.60None
Testis7 ± 12 of 4 0.80None
Male accessory glands4 ± 10 of 4 0.40Down
Virgin spermatheca2 ± 00 of 4 0.28Down
Mated spermatheca2 ± 00 of 4 0.29Down
Adult carcass10 ± 30 of 4 1.10None
Larval CNS29 ± 24 of 4 3.23Up
Larval Salivary gland3 ± 00 of 4 0.35Down
Larval midgut1 ± 00 of 4 0.16Down
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.26Down
Larval fat body5 ± 20 of 4 0.60None
Larval trachea2 ± 10 of 4 0.24Down
Larval carcass3 ± 20 of 4 0.43None
S2 cells (growing)2 ± 10 of 4 0.27Down
Whole fly9 ± 10 of 4

Looking for FBgn0039530. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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