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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039531 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:23460719-23461761 (-) // 100.0 //):

Annotation Number : CG5611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1622989_at
Accessions : protein= EC:5.3.3.-, nucleotide=
Interpro : 0008152 // metabolic process // inferred from electronic annotation
Homophila reports that CG5611 is a close match (9e-12) to human gene AUH (NP_001689), a gene associated with 3-methylglutaconic aciduria, type I, 250950 (3).
BioGrid reports that CG5611 interacts with CG5844 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 24 of 4 1.80Up
Head27 ± 24 of 4 1.10None
Eye31 ± 14 of 4 1.27None
Thoracicoabdominal ganglion45 ± 04 of 4 1.80Up
Salivary gland56 ± 44 of 4 2.26Up
Crop30 ± 14 of 4 1.20None
Midgut37 ± 24 of 4 1.50Up
Tubule13 ± 12 of 4 0.60Down
Hindgut38 ± 14 of 4 1.60Up
Heart24 ± 24 of 4 0.97None
Fat body38 ± 104 of 4 1.55None
Ovary38 ± 24 of 4 1.50Up
Testis14 ± 24 of 4 0.60Down
Male accessory glands27 ± 34 of 4 1.10None
Virgin spermatheca17 ± 14 of 4 0.70None
Mated spermatheca20 ± 13 of 4 0.83None
Adult carcass35 ± 44 of 4 1.40None
Larval CNS30 ± 44 of 4 1.21None
Larval Salivary gland68 ± 74 of 4 2.74Up
Larval midgut31 ± 24 of 4 1.26None
Larval tubule37 ± 34 of 4 1.50Up
Larval hindgut39 ± 34 of 4 1.58Up
Larval fat body31 ± 14 of 4 1.30None
Larval trachea29 ± 14 of 4 1.21None
Larval carcass43 ± 24 of 4 1.77Up
S2 cells (growing)46 ± 14 of 4 1.89Up
Whole fly24 ± 24 of 4

Looking for FBgn0039531. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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