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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039538 through 18771 annotations produced 1 hits



(CG12883):

Annotation Number : CG12883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039538
Gbrowse : chr3R:23505131-23505675 (+) // 100.0 //
Probeset : 1635219_at
Accessions : protein= NP_651579;, nucleotide= NM_143322;
FlyMine data for FBgn0039538.
VDRC has 1 RNAi stocks for FBgn0039538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 14 of 4 0.50Down
Head25 ± 14 of 4 0.40Down
Eye38 ± 54 of 4 0.66Down
Thoracicoabdominal ganglion26 ± 14 of 4 0.50Down
Salivary gland32 ± 23 of 4 0.57Down
Crop20 ± 24 of 4 0.40Down
Midgut81 ± 74 of 4 1.40Up
Tubule39 ± 14 of 4 0.70Down
Hindgut46 ± 24 of 4 0.80Down
Heart30 ± 24 of 4 0.52Down
Fat body36 ± 74 of 4 0.63Down
Ovary108 ± 44 of 4 1.90Up
Testis18 ± 14 of 4 0.30Down
Male accessory glands61 ± 54 of 4 1.10None
Virgin spermatheca20 ± 04 of 4 0.35Down
Mated spermatheca20 ± 04 of 4 0.36Down
Adult carcass26 ± 13 of 4 0.50Down
Larval CNS36 ± 14 of 4 0.63Down
Larval Salivary gland44 ± 44 of 4 0.77None
Larval midgut85 ± 74 of 4 1.47Up
Larval tubule45 ± 34 of 4 0.80Down
Larval hindgut100 ± 84 of 4 1.73Up
Larval fat body92 ± 64 of 4 1.60Up
Larval trachea44 ± 24 of 4 0.76Down
Larval carcass19 ± 24 of 4 0.34Down
S2 cells (growing)95 ± 24 of 4 1.65Up
Whole fly58 ± 24 of 4

Looking for FBgn0039538. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime