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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039551 through 18771 annotations produced 1 hits



Odorant receptor 98a (Or98a):

Annotation Number : CG5540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039551
Gbrowse : chr3R:23671671-23672982 (+) // 100.0 //
Probeset : 1635599_at
Accessions : protein= NP_524536;, nucleotide= NM_079812;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0039551.
VDRC has 2 RNAi stocks for FBgn0039551 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head7 03 of 4 5.80Up
Eye3 00 of 4 2.65None
Thoracicoabdominal ganglion0 00 of 4 0.60None
Salivary gland8 10 of 4 6.43Up
Crop2 00 of 4 1.40None
Midgut2 10 of 4 1.60None
Tubule2 00 of 4 1.90Up
Hindgut0 00 of 4 0.70None
Heart2 10 of 4 1.61None
Fat body2 10 of 4 1.94None
Ovary1 00 of 4 0.90None
Testis2 00 of 4 1.70None
Male accessory glands3 10 of 4 2.60None
Virgin spermatheca1 00 of 4 0.93None
Mated spermatheca2 10 of 4 2.00None
Adult carcass2 20 of 4 2.10None
Larval CNS2 10 of 4 1.54None
Larval Salivary gland2 10 of 4 2.00None
Larval midgut3 10 of 4 2.30None
Larval tubule1 00 of 4 1.00None
Larval hindgut2 00 of 4 2.02None
Larval fat body6 01 of 4 4.60Up
Larval trachea1 00 of 4 0.98None
Larval carcass1 00 of 4 1.28None
S2 cells (growing)1 00 of 4 0.76None
Whole fly1 00 of 4

Looking for FBgn0039551. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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