FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039560 through 18771 annotations produced 2 hits

(CG5514):

Annotation Number : CG5514
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039560
Gbrowse : chr3R:23763966-23768507 (+) // 100.0 //
Probeset : 1630124_at
Accessions : protein= NP_001163751; /// NP_651599; /// NP_733240;, nucleotide= NM_001170280; /// NM_143342; /// NM_170361;
Interpro : 0005199 // structural constituent of cell wall // inferred from electronic annotation
FlyMine data for FBgn0039560.
BDGP gene expression has embryonic in situ data for CG5514: 9 pix of staining in 2 body parts.
BioGrid reports that CG5514 interacts with CG6046 CG7033 CG8193 CG8309 CG9796 .
TRiP has 1 RNAi stocks for FBgn0039560 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039560 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	143 ± 5	4 of 4	4.20	Up
Head	24 ± 2	4 of 4	0.70	Down
Eye	19 ± 2	4 of 4	0.55	Down
Thoracicoabdominal ganglion	115 ± 5	4 of 4	3.30	Up
Salivary gland	26 ± 9	1 of 4	0.76	None
Crop	4 ± 1	0 of 4	0.10	Down
Midgut	11 ± 1	2 of 4	0.30	Down
Tubule	9 ± 1	0 of 4	0.30	Down
Hindgut	5 ± 1	0 of 4	0.20	Down
Heart	5 ± 1	0 of 4	0.15	Down
Fat body	4 ± 2	0 of 4	0.13	Down
Ovary	80 ± 3	4 of 4	2.30	Up
Testis	130 ± 9	4 of 4	3.80	Up
Male accessory glands	7 ± 0	0 of 4	0.20	Down
Virgin spermatheca	3 ± 1	0 of 4	0.11	Down
Mated spermatheca	3 ± 0	0 of 4	0.11	Down
Adult carcass	10 ± 3	0 of 4	0.30	Down
Larval CNS	147 ± 10	4 of 4	4.27	Up
Larval Salivary gland	42 ± 6	4 of 4	1.23	None
Larval midgut	6 ± 2	0 of 4	0.20	Down
Larval tubule	2 ± 0	0 of 4	0.10	Down
Larval hindgut	4 ± 1	0 of 4	0.11	Down
Larval fat body	15 ± 7	1 of 4	0.50	None
Larval trachea	7 ± 2	0 of 4	0.21	Down
Larval carcass	8 ± 2	0 of 4	0.24	Down
S2 cells (growing)	9 ± 0	2 of 4	0.27	Down
Whole fly	34 ± 2	4 of 4

(CG5514):

Annotation Number : CG5514
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039560
Gbrowse : chr3R:23763966-23768507 (+) // 100.0 //
Probeset : 1624644_a_at
Accessions : protein= NP_001163751; /// NP_651599; /// NP_733240;, nucleotide= NM_001170280; /// NM_143342; /// NM_170361;
Interpro : 0005199 // structural constituent of cell wall // inferred from electronic annotation
FlyMine data for FBgn0039560.
BDGP gene expression has embryonic in situ data for CG5514: 9 pix of staining in 2 body parts.
BioGrid reports that CG5514 interacts with CG6046 CG7033 CG8193 CG8309 CG9796 .
TRiP has 1 RNAi stocks for FBgn0039560 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039560 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	102 ± 5	4 of 4	1.80	Up
Head	52 ± 6	4 of 4	0.90	None
Eye	97 ± 7	4 of 4	1.70	Up
Thoracicoabdominal ganglion	74 ± 5	4 of 4	1.30	None
Salivary gland	123 ± 6	4 of 4	2.16	Up
Crop	66 ± 3	4 of 4	1.20	None
Midgut	37 ± 5	3 of 4	0.70	Down
Tubule	40 ± 0	4 of 4	0.70	Down
Hindgut	58 ± 2	4 of 4	1.00	None
Heart	28 ± 2	4 of 4	0.50	Down
Fat body	36 ± 5	4 of 4	0.64	Down
Ovary	103 ± 1	4 of 4	1.80	Up
Testis	161 ± 2	4 of 4	2.80	Up
Male accessory glands	171 ± 7	4 of 4	3.00	Up
Virgin spermatheca	46 ± 2	4 of 4	0.80	None
Mated spermatheca	49 ± 5	4 of 4	0.87	None
Adult carcass	54 ± 2	4 of 4	1.00	None
Larval CNS	112 ± 9	4 of 4	1.97	Up
Larval Salivary gland	147 ± 5	4 of 4	2.57	Up
Larval midgut	39 ± 6	4 of 4	0.69	None
Larval tubule	38 ± 1	4 of 4	0.70	Down
Larval hindgut	56 ± 3	4 of 4	0.99	None
Larval fat body	49 ± 6	4 of 4	0.90	None
Larval trachea	88 ± 13	4 of 4	1.55	Up
Larval carcass	52 ± 4	4 of 4	0.91	None
S2 cells (growing)	67 ± 3	4 of 4	1.17	None
Whole fly	57 ± 4	4 of 4

Looking for FBgn0039560. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720