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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039566 through 18771 annotations produced 2 hits



(CG4849):

Annotation Number : CG4849
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039566
Gbrowse : chr3R:23789137-23792688 (+) // 100.0 //
Probeset : 1624364_at
Accessions : protein= NP_651605;, nucleotide= NM_143348;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006414 // translational elongation // inferred
FlyMine data for FBgn0039566.
BDGP gene expression has embryonic in situ data for CG4849: 4 pix of staining in 1 body parts.
Homophila reports that CG4849 is a close match (2e-11) to human gene COXPD1;EFG1;GFM;GFM1 (NP_079272), a gene associated with Combined oxidative phosphorylation deficiency 1, 609060 (3).
BioGrid reports that CG4849 interacts with CG32514 CG7347 .
TRiP has 1 RNAi stocks for FBgn0039566 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039566 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 ± 44 of 4 0.80None
Head77 ± 54 of 4 0.50Down
Eye76 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion142 ± 124 of 4 1.00None
Salivary gland89 ± 73 of 4 0.62Down
Crop88 ± 54 of 4 0.60Down
Midgut53 ± 14 of 4 0.40Down
Tubule100 ± 74 of 4 0.70Down
Hindgut74 ± 24 of 4 0.50Down
Heart51 ± 24 of 4 0.36Down
Fat body73 ± 114 of 4 0.51Down
Ovary226 ± 14 of 4 1.60Up
Testis40 ± 14 of 4 0.30Down
Male accessory glands148 ± 74 of 4 1.00None
Virgin spermatheca114 ± 34 of 4 0.80Down
Mated spermatheca129 ± 34 of 4 0.90None
Adult carcass59 ± 44 of 4 0.40Down
Larval CNS356 ± 184 of 4 2.48Up
Larval Salivary gland116 ± 74 of 4 0.81Down
Larval midgut50 ± 34 of 4 0.35Down
Larval tubule89 ± 84 of 4 0.60Down
Larval hindgut98 ± 34 of 4 0.68Down
Larval fat body71 ± 124 of 4 0.50Down
Larval trachea165 ± 234 of 4 1.15None
Larval carcass111 ± 74 of 4 0.77Down
S2 cells (growing)183 ± 34 of 4 1.28Up
Whole fly143 ± 74 of 4



/// (CG31054 /// CG4849):

Annotation Number : CG31054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039566 /// FBgn0051054
Gbrowse : chrUextra:3599385-3600062 (+) // 94.24 // /// chr3R:23786491-23787198 (+) // 100.0 // /// chr3R:23789137-23789795 (+) // 90.6 //
Probeset : 1638331_s_at
Accessions : protein= NP_651605; /// NP_733242;, nucleotide= NM_143348; /// NM_170363;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006414 // translational elongation // inferred
FlyMine data for FBgn0039566 /// FBgn0051054.
BioGrid reports that CG31054 interacts with CG32514 CG7347 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 24 of 4 1.10None
Head10 ± 22 of 4 0.50Down
Eye4 ± 10 of 4 0.17Down
Thoracicoabdominal ganglion16 ± 42 of 4 0.70None
Salivary gland15 ± 21 of 4 0.66None
Crop19 ± 14 of 4 0.80None
Midgut11 ± 31 of 4 0.50Down
Tubule5 ± 00 of 4 0.20Down
Hindgut15 ± 13 of 4 0.70None
Heart5 ± 11 of 4 0.22Down
Fat body10 ± 51 of 4 0.45Down
Ovary44 ± 44 of 4 1.90Up
Testis6 ± 11 of 4 0.30Down
Male accessory glands15 ± 42 of 4 0.70None
Virgin spermatheca6 ± 11 of 4 0.27Down
Mated spermatheca6 ± 10 of 4 0.27Down
Adult carcass12 ± 41 of 4 0.60None
Larval CNS26 ± 34 of 4 1.15None
Larval Salivary gland16 ± 24 of 4 0.69None
Larval midgut13 ± 21 of 4 0.56Down
Larval tubule20 ± 14 of 4 0.90None
Larval hindgut9 ± 13 of 4 0.41Down
Larval fat body26 ± 34 of 4 1.10None
Larval trachea10 ± 14 of 4 0.47Down
Larval carcass6 ± 10 of 4 0.29Down
S2 cells (growing)69 ± 64 of 4 3.00Up
Whole fly23 ± 34 of 4

Looking for FBgn0039566. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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