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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039581 through 18771 annotations produced 1 hits



Moca-cyp (Moca-cyp):

Annotation Number : CG1866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039581
Gbrowse : chr3R:24166059-24170889 (+) // 100.0 //
Probeset : 1632272_a_at
Accessions : protein= NP_001163758; /// NP_651618; /// NP_733246;, nucleotide= NM_001170287; /// NM_143361; /// NM_170367;
Pathway : via spliceosome // inferred by curator /// 0006457 // protein folding // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0071011 //
FlyMine data for FBgn0039581.
BDGP gene expression has embryonic in situ data for Moca-cyp: 10 pix of staining in 10 body parts.
VDRC has 2 RNAi stocks for FBgn0039581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain456 ± 94 of 4 3.30Up
Head133 ± 94 of 4 1.00None
Eye109 ± 24 of 4 0.81Down
Thoracicoabdominal ganglion308 ± 94 of 4 2.30Up
Salivary gland91 ± 54 of 4 0.67Down
Crop98 ± 54 of 4 0.70Down
Midgut41 ± 54 of 4 0.30Down
Tubule117 ± 14 of 4 0.90Down
Hindgut86 ± 34 of 4 0.60Down
Heart54 ± 14 of 4 0.40Down
Fat body73 ± 54 of 4 0.54Down
Ovary263 ± 54 of 4 1.90Up
Testis64 ± 44 of 4 0.50Down
Male accessory glands96 ± 24 of 4 0.70Down
Virgin spermatheca67 ± 24 of 4 0.50Down
Mated spermatheca71 ± 24 of 4 0.52Down
Adult carcass92 ± 24 of 4 0.70Down
Larval CNS349 ± 294 of 4 2.57Up
Larval Salivary gland147 ± 104 of 4 1.08None
Larval midgut65 ± 04 of 4 0.48Down
Larval tubule81 ± 24 of 4 0.60Down
Larval hindgut124 ± 64 of 4 0.92None
Larval fat body81 ± 34 of 4 0.60Down
Larval trachea111 ± 74 of 4 0.82Down
Larval carcass77 ± 54 of 4 0.57Down
S2 cells (growing)167 ± 64 of 4 1.23Up
Whole fly136 ± 74 of 4

Looking for FBgn0039581. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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