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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039589 through 18771 annotations produced 1 hits



(CG9986):

Annotation Number : CG9986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039589
Gbrowse : chr3R:24431858-24434096 (+) // 100.0 //
Probeset : 1627415_at
Accessions : protein= NP_651623;, nucleotide= NM_143366;
FlyMine data for FBgn0039589.
BDGP gene expression has embryonic in situ data for CG9986: 38 pix of staining in 8 body parts.
VDRC has 2 RNAi stocks for FBgn0039589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 ± 34 of 4 1.00None
Head66 ± 24 of 4 0.50Down
Eye44 ± 04 of 4 0.35Down
Thoracicoabdominal ganglion108 ± 14 of 4 0.90None
Salivary gland109 ± 64 of 4 0.85None
Crop91 ± 74 of 4 0.70Down
Midgut66 ± 44 of 4 0.50Down
Tubule52 ± 14 of 4 0.40Down
Hindgut74 ± 44 of 4 0.60Down
Heart175 ± 74 of 4 1.37Up
Fat body89 ± 104 of 4 0.70Down
Ovary429 ± 144 of 4 3.40Up
Testis70 ± 14 of 4 0.50Down
Male accessory glands104 ± 84 of 4 0.80None
Virgin spermatheca96 ± 54 of 4 0.75Down
Mated spermatheca101 ± 44 of 4 0.79Down
Adult carcass54 ± 54 of 4 0.40Down
Larval CNS199 ± 124 of 4 1.56Up
Larval Salivary gland151 ± 34 of 4 1.18None
Larval midgut71 ± 34 of 4 0.56Down
Larval tubule91 ± 14 of 4 0.70Down
Larval hindgut106 ± 54 of 4 0.83None
Larval fat body121 ± 54 of 4 1.00None
Larval trachea95 ± 74 of 4 0.75Down
Larval carcass147 ± 64 of 4 1.15None
S2 cells (growing)259 ± 74 of 4 2.03Up
Whole fly128 ± 84 of 4

Looking for FBgn0039589. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime