FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039590 through 18771 annotations produced 1 hits

(CG10011):

Annotation Number : CG10011
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039590
Gbrowse : chr3R:24433652-24460785 (-) // 100.0 //
Probeset : 1625581_at
Accessions : protein= NP_651624;, nucleotide= NM_143367;
FlyMine data for FBgn0039590.
Homophila reports that CG10011 is a close match (5e-12) to human gene SANS;USH1G (NP_775748), a gene associated with Usher syndrome, type 1G, 606943 (3).
VDRC has 3 RNAi stocks for FBgn0039590 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	305 ± 20	4 of 4	14.40	Up
Head	69 ± 7	4 of 4	3.30	Up
Eye	41 ± 4	4 of 4	1.94	Up
Thoracicoabdominal ganglion	163 ± 10	4 of 4	7.70	Up
Salivary gland	20 ± 3	3 of 4	0.97	None
Crop	46 ± 4	4 of 4	2.20	Up
Midgut	27 ± 4	4 of 4	1.30	None
Tubule	29 ± 3	4 of 4	1.40	Up
Hindgut	40 ± 5	4 of 4	1.90	Up
Heart	18 ± 1	4 of 4	0.85	None
Fat body	30 ± 3	4 of 4	1.41	Up
Ovary	14 ± 1	4 of 4	0.70	Down
Testis	9 ± 1	4 of 4	0.40	Down
Male accessory glands	32 ± 4	4 of 4	1.50	None
Virgin spermatheca	45 ± 3	4 of 4	2.15	Up
Mated spermatheca	48 ± 3	4 of 4	2.27	Up
Adult carcass	21 ± 3	4 of 4	1.00	None
Larval CNS	181 ± 44	4 of 4	8.54	Up
Larval Salivary gland	10 ± 1	2 of 4	0.49	Down
Larval midgut	37 ± 4	4 of 4	1.75	Up
Larval tubule	18 ± 4	4 of 4	0.90	None
Larval hindgut	33 ± 3	4 of 4	1.58	Up
Larval fat body	14 ± 1	3 of 4	0.70	Down
Larval trachea	20 ± 3	4 of 4	0.94	None
Larval carcass	17 ± 2	4 of 4	0.80	None
S2 cells (growing)	45 ± 5	4 of 4	2.15	Up
Whole fly	21 ± 1	4 of 4

Looking for FBgn0039590. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720