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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039592 through 18771 annotations produced 1 hits



(CG14062):

Annotation Number : CG14062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039592
Gbrowse : chr3R:24467442-24468454 (-) // 100.0 //
Probeset : 1631903_at
Accessions : protein= NP_001034074;, nucleotide= NM_001038985;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred fro
FlyMine data for FBgn0039592.
BDGP gene expression has embryonic in situ data for CG14062: 4 pix of staining in 1 body parts.
BioGrid reports that CG14062 interacts with CG14938 CG3510 CG6866 CG7832 .
VDRC has 2 RNAi stocks for FBgn0039592 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.80None
Head3 ± 10 of 4 0.60None
Eye8 ± 02 of 4 1.50None
Thoracicoabdominal ganglion4 ± 10 of 4 0.80None
Salivary gland4 ± 10 of 4 0.82None
Crop3 ± 20 of 4 0.60None
Midgut1 ± 00 of 4 0.20None
Tubule5 ± 10 of 4 1.00None
Hindgut4 ± 00 of 4 0.70None
Heart1 ± 00 of 4 0.34None
Fat body5 ± 20 of 4 0.99None
Ovary3 ± 10 of 4 0.70None
Testis5 ± 00 of 4 0.90None
Male accessory glands1 ± 00 of 4 0.20None
Virgin spermatheca5 ± 10 of 4 1.00None
Mated spermatheca5 ± 21 of 4 0.89None
Adult carcass7 ± 10 of 4 1.40None
Larval CNS2 ± 10 of 4 0.50None
Larval Salivary gland14 ± 21 of 4 2.47None
Larval midgut3 ± 10 of 4 0.59None
Larval tubule4 ± 10 of 4 0.80None
Larval hindgut4 ± 00 of 4 0.82None
Larval fat body8 ± 40 of 4 1.60None
Larval trachea4 ± 41 of 4 0.82None
Larval carcass2 ± 10 of 4 0.50None
S2 cells (growing)1 ± 00 of 4 0.18None
Whole fly5 ± 21 of 4

Looking for FBgn0039592. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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