FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039596 through 18771 annotations produced 1 hits

(CG10000):

Annotation Number : CG10000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039596
Gbrowse : chr3R:24574104-24577313 (-) // 100.0 //
Probeset : 1638273_at
Accessions : protein= NP_651630;, nucleotide= NM_143373;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from sequence or structural similarity //
FlyMine data for FBgn0039596.
Homophila reports that CG10000 is a close match (2e-62) to human gene GALNT3;HFTC;HHS (NP_004473), a gene associated with Hyperostosis-hyperphosphatemia syndrome, 610233 (3);Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.40	None
Head	0 ± 0	0 of 4	0.20	Down
Eye	2 ± 1	0 of 4	0.59	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.10	Down
Salivary gland	11 ± 4	0 of 4	2.70	None
Crop	2 ± 1	0 of 4	0.60	None
Midgut	23 ± 3	1 of 4	5.60	Up
Tubule	1 ± 0	0 of 4	0.40	Down
Hindgut	9 ± 0	0 of 4	2.10	Up
Heart	3 ± 0	0 of 4	0.88	None
Fat body	11 ± 7	0 of 4	2.68	None
Ovary	2 ± 1	0 of 4	0.50	None
Testis	3 ± 1	0 of 4	0.70	None
Male accessory glands	68 ± 5	4 of 4	16.10	Up
Virgin spermatheca	1 ± 0	0 of 4	0.32	None
Mated spermatheca	5 ± 2	0 of 4	1.24	None
Adult carcass	2 ± 0	0 of 4	0.50	None
Larval CNS	0 ± 0	0 of 4	0.18	Down
Larval Salivary gland	2 ± 1	0 of 4	0.50	None
Larval midgut	9 ± 2	0 of 4	2.25	None
Larval tubule	0 ± 0	0 of 4	0.20	Down
Larval hindgut	6 ± 2	0 of 4	1.40	None
Larval fat body	1 ± 0	0 of 4	0.30	None
Larval trachea	2 ± 2	0 of 4	0.66	None
Larval carcass	3 ± 1	0 of 4	0.78	None
S2 cells (growing)	3 ± 1	0 of 4	0.81	None
Whole fly	4 ± 1	0 of 4

Looking for FBgn0039596. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720