FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039601 through 18771 annotations produced 1 hits

(CG1523):

Annotation Number : CG1523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039601
Gbrowse : chr3R:24643063-24645346 (-) // 99.76 //
Probeset : 1631466_at
Accessions : protein= NP_651635;, nucleotide= NM_143378;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039601.
BDGP gene expression has embryonic in situ data for CG1523: 10 pix of staining in 3 body parts.
BioGrid reports that CG1523 interacts with CG18582 .
VDRC has 2 RNAi stocks for FBgn0039601 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	131 ± 3	4 of 4	1.00	None
Head	105 ± 5	4 of 4	0.80	Down
Eye	122 ± 2	4 of 4	0.96	None
Thoracicoabdominal ganglion	120 ± 3	4 of 4	0.90	None
Salivary gland	197 ± 8	4 of 4	1.55	Up
Crop	162 ± 8	4 of 4	1.30	Up
Midgut	114 ± 3	4 of 4	0.90	None
Tubule	134 ± 6	4 of 4	1.10	None
Hindgut	108 ± 0	4 of 4	0.90	Down
Heart	94 ± 7	4 of 4	0.74	Down
Fat body	86 ± 1	4 of 4	0.68	Down
Ovary	190 ± 5	4 of 4	1.50	Up
Testis	66 ± 2	4 of 4	0.50	Down
Male accessory glands	152 ± 3	4 of 4	1.20	Up
Virgin spermatheca	118 ± 6	4 of 4	0.93	None
Mated spermatheca	140 ± 8	4 of 4	1.10	None
Adult carcass	135 ± 10	4 of 4	1.10	None
Larval CNS	177 ± 3	4 of 4	1.39	Up
Larval Salivary gland	205 ± 4	4 of 4	1.61	Up
Larval midgut	128 ± 1	4 of 4	1.01	None
Larval tubule	134 ± 6	4 of 4	1.10	None
Larval hindgut	120 ± 5	4 of 4	0.95	None
Larval fat body	114 ± 8	4 of 4	0.90	None
Larval trachea	142 ± 3	4 of 4	1.11	None
Larval carcass	136 ± 9	4 of 4	1.07	None
S2 cells (growing)	186 ± 4	4 of 4	1.46	Up
Whole fly	127 ± 5	4 of 4

Looking for FBgn0039601. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720