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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039611 through 18771 annotations produced 1 hits



(CG14528):

Annotation Number : CG14528
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039611
Gbrowse : chr3R:24701363-24703416 (+) // 100.0 //
Probeset : 1639530_at
Accessions : protein= NP_651643;, nucleotide= NM_143386;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0039611.
BDGP gene expression has embryonic in situ data for CG14528: 13 pix of staining in 3 body parts.
Homophila reports that CG14528 is a close match (7e-22) to human gene KEL (NP_000411), a gene associated with [Blood group, Kell] (3).
BioGrid reports that CG14528 interacts with CG5846 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 12 of 4 0.60Down
Head120 ± 144 of 4 7.10Up
Eye46 ± 64 of 4 2.73Up
Thoracicoabdominal ganglion6 ± 20 of 4 0.40Down
Salivary gland9 ± 20 of 4 0.54Down
Crop3 ± 10 of 4 0.20Down
Midgut8 ± 10 of 4 0.50Down
Tubule4 ± 00 of 4 0.30Down
Hindgut10 ± 10 of 4 0.60Down
Heart46 ± 94 of 4 2.75None
Fat body138 ± 164 of 4 8.19Up
Ovary2 ± 00 of 4 0.20Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands2 ± 10 of 4 0.20Down
Virgin spermatheca124 ± 194 of 4 7.37Up
Mated spermatheca86 ± 94 of 4 5.13Up
Adult carcass123 ± 84 of 4 7.30Up
Larval CNS5 ± 20 of 4 0.33Down
Larval Salivary gland6 ± 10 of 4 0.37Down
Larval midgut8 ± 20 of 4 0.49Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut7 ± 00 of 4 0.41Down
Larval fat body253 ± 224 of 415.00Up
Larval trachea2 ± 20 of 4 0.14Down
Larval carcass7 ± 00 of 4 0.42Down
S2 cells (growing)10 ± 01 of 4 0.63Down
Whole fly16 ± 12 of 4

Looking for FBgn0039611. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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