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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039613 through 18771 annotations produced 1 hits



(CG14527):

Annotation Number : CG14527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039613
Gbrowse : chr3R:24706524-24708627 (+) // 100.0 //
Probeset : 1624413_at
Accessions : protein= NP_651645;, nucleotide= NM_143388;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0039613.
Homophila reports that CG14527 is a close match (8e-31) to human gene KEL (NP_000411), a gene associated with [Blood group, Kell] (3).
VDRC has 3 RNAi stocks for FBgn0039613 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.50None
Head15 ± 11 of 4 2.60Up
Eye5 ± 00 of 4 1.00None
Thoracicoabdominal ganglion4 ± 10 of 4 0.80None
Salivary gland18 ± 21 of 4 3.17Up
Crop8 ± 21 of 4 1.40None
Midgut2 ± 10 of 4 0.40None
Tubule4 ± 00 of 4 0.70Down
Hindgut1 ± 00 of 4 0.30Down
Heart15 ± 12 of 4 2.53Up
Fat body22 ± 63 of 4 3.76Up
Ovary2 ± 10 of 4 0.40None
Testis1 ± 00 of 4 0.30Down
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca28 ± 03 of 4 4.74Up
Mated spermatheca31 ± 44 of 4 5.33Up
Adult carcass10 ± 10 of 4 1.80Up
Larval CNS6 ± 21 of 4 1.12None
Larval Salivary gland8 ± 10 of 4 1.47None
Larval midgut2 ± 00 of 4 0.36Down
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut14 ± 01 of 4 2.50Up
Larval fat body45 ± 40 of 4 7.60Up
Larval trachea22 ± 64 of 4 3.79Up
Larval carcass43 ± 42 of 4 7.36Up
S2 cells (growing)931 ± 54 of 4156.57Up
Whole fly6 ± 10 of 4

Looking for FBgn0039613. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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