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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039621 through 18771 annotations produced 1 hits



(CG14518):

Annotation Number : CG14518
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039621
Gbrowse : chr3R:24850826-24851797 (+) // 100.0 //
Probeset : 1629773_at
Accessions : protein= NP_651653;, nucleotide= NM_143396;
FlyMine data for FBgn0039621.
VDRC has 4 RNAi stocks for FBgn0039621 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.20None
Head15 ± 04 of 4 3.10Up
Eye1 ± 10 of 4 0.34None
Thoracicoabdominal ganglion3 ± 00 of 4 0.80None
Salivary gland9 ± 10 of 4 1.86None
Crop33 ± 24 of 4 6.80Up
Midgut9 ± 03 of 4 1.90Up
Tubule3 ± 00 of 4 0.80None
Hindgut10 ± 13 of 4 2.10Up
Heart1 ± 00 of 4 0.37None
Fat body4 ± 00 of 4 0.83None
Ovary1 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.30None
Male accessory glands61 ± 44 of 412.30Up
Virgin spermatheca7 ± 11 of 4 1.45None
Mated spermatheca6 ± 12 of 4 1.33None
Adult carcass7 ± 21 of 4 1.50None
Larval CNS1 ± 00 of 4 0.31None
Larval Salivary gland2 ± 21 of 4 0.53None
Larval midgut2 ± 00 of 4 0.41None
Larval tubule2 ± 10 of 4 0.40None
Larval hindgut2 ± 00 of 4 0.42None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea7 ± 12 of 4 1.52None
Larval carcass1 ± 00 of 4 0.23None
S2 cells (growing)1 ± 00 of 4 0.31None
Whole fly5 ± 12 of 4

Looking for FBgn0039621. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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